Variant report

Variant	rs3121003
Chromosome Location	chr1:150168604-150168605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11205344	0.89[AMR][1000 genomes]
rs12060797	0.89[AMR][1000 genomes]
rs12063159	0.89[AMR][1000 genomes]
rs12075620	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12086155	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs13375906	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16835254	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs58395667	0.96[AFR][1000 genomes]
rs73009573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73009583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73009584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv535153	chr1:150147218-150168829	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150167200-150168800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr1:150167400-150171200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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