Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1085	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs11164599	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11164618	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11164634	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs12025494	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[JPT][hapmap]
rs12036095	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12045132	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs12080230	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12086644	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1241163	0.82[CHB][hapmap]
rs1241184	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs1676486	0.94[CHB][hapmap]
rs17127203	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap]
rs1763347	0.88[CHB][hapmap]
rs2783567	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs3753844	1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap]
rs478271	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4907978	0.86[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4908273	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs7550513	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8179334	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs9659030	0.94[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462705	chr1:103123803-103267759	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv546923	chr1:103123803-103267759	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv870987	chr1:103155901-103267759	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv546925	chr1:103176592-103267759	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv546926	chr1:103183066-103267759	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv830882	chr1:103192683-103355802	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv546927	chr1:103199589-103267759	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103265400-103266200	Enhancers	Brain Germinal Matrix	brain

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