Variant report

Variant	rs478271
Chromosome Location	chr1:103299472-103299473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1085	0.83[ASN][1000 genomes]
rs10874659	0.87[ASN][1000 genomes]
rs11164618	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164634	0.84[ASN][1000 genomes]
rs12025494	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12034088	0.87[ASN][1000 genomes]
rs12047349	0.83[ASN][1000 genomes]
rs12078115	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12080230	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12086644	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1241163	0.84[ASN][1000 genomes]
rs1241184	0.87[ASN][1000 genomes]
rs1241185	0.86[ASN][1000 genomes]
rs1676486	0.84[ASN][1000 genomes]
rs17127203	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1763347	0.84[ASN][1000 genomes]
rs2783567	0.86[ASN][1000 genomes]
rs3753844	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6701464	0.85[ASN][1000 genomes]
rs9659030	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830882	chr1:103192683-103355802	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103299000-103299800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:103299200-103299600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:103299200-103300200	Enhancers	Placenta Amnion	Placenta Amnion
4	chr1:103299400-103301000	Weak transcription	Placenta	Placenta
5	chr1:103299400-103302800	Weak transcription	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links