Variant report
| Variant | rs1207819 |
|---|---|
| Chromosome Location | chr7:78473037-78473038 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs1207820 | 0.97[ASN][1000 genomes] |
| rs12670051 | 0.85[ASN][1000 genomes] |
| rs1330497 | 1.00[CEU][hapmap] |
| rs1928911 | 0.85[ASN][1000 genomes] |
| rs1928912 | 0.85[ASN][1000 genomes] |
| rs2065198 | 0.90[ASN][1000 genomes] |
| rs4730552 | 0.84[ASN][1000 genomes] |
| rs474780 | 0.87[ASN][1000 genomes] |
| rs488478 | 0.87[ASN][1000 genomes] |
| rs491394 | 0.94[ASN][1000 genomes] |
| rs508142 | 0.86[ASN][1000 genomes] |
| rs508789 | 1.00[CEU][hapmap] |
| rs508841 | 0.85[ASN][1000 genomes] |
| rs514025 | 0.87[ASN][1000 genomes] |
| rs514156 | 0.97[ASN][1000 genomes] |
| rs514951 | 0.87[ASN][1000 genomes] |
| rs516085 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs522601 | 0.97[ASN][1000 genomes] |
| rs527231 | 0.87[ASN][1000 genomes] |
| rs529602 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs541737 | 0.91[ASN][1000 genomes] |
| rs552822 | 0.97[ASN][1000 genomes] |
| rs563887 | 1.00[CEU][hapmap] |
| rs564808 | 0.87[ASN][1000 genomes] |
| rs571376 | 1.00[CEU][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs571502 | 0.89[ASN][1000 genomes] |
| rs573635 | 1.00[CEU][hapmap] |
| rs576744 | 0.97[ASN][1000 genomes] |
| rs578047 | 0.89[ASN][1000 genomes] |
| rs578326 | 0.97[ASN][1000 genomes] |
| rs62467691 | 0.87[EUR][1000 genomes] |
| rs6950191 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7794352 | 0.85[ASN][1000 genomes] |
| rs969699 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv607657 | chr7:78329795-78483211 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv949647 | chr7:78406281-78495913 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv1024961 | chr7:78432257-78483201 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
| 4 | nsv607658 | chr7:78456148-78473591 | Enhancers ZNF genes & repeats Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
