Variant report

No.	Distal block	Cell Line	Cell type
1	chr1:168805678..168808181-chr1:168833008..168834591,2	MCF-7	breast:
2	chr1:168827977..168831348-chr1:168831730..168835477,4	MCF-7	breast:
3	chr1:168831234..168833463-chr1:168837204..168838715,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10919012	1.00[EUR][1000 genomes]
rs12058057	1.00[EUR][1000 genomes]
rs12058379	1.00[EUR][1000 genomes]
rs12060178	1.00[EUR][1000 genomes]
rs12061744	1.00[EUR][1000 genomes]
rs12063868	1.00[EUR][1000 genomes]
rs12064456	1.00[EUR][1000 genomes]
rs12072744	1.00[EUR][1000 genomes]
rs12078028	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12082826	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2064472	1.00[EUR][1000 genomes]
rs2206299	1.00[EUR][1000 genomes]
rs56930710	1.00[EUR][1000 genomes]
rs57257422	1.00[EUR][1000 genomes]
rs58149156	1.00[EUR][1000 genomes]
rs59796296	1.00[EUR][1000 genomes]
rs60014051	1.00[EUR][1000 genomes]
rs60151518	1.00[EUR][1000 genomes]
rs60306829	1.00[EUR][1000 genomes]
rs60993038	1.00[EUR][1000 genomes]
rs61365006	1.00[EUR][1000 genomes]
rs6698984	1.00[EUR][1000 genomes]
rs73032097	1.00[EUR][1000 genomes]
rs73032100	1.00[EUR][1000 genomes]
rs73034203	1.00[EUR][1000 genomes]
rs73034209	1.00[EUR][1000 genomes]
rs73034218	1.00[EUR][1000 genomes]
rs73034224	1.00[EUR][1000 genomes]
rs73034238	1.00[EUR][1000 genomes]
rs73040271	1.00[EUR][1000 genomes]
rs73042062	1.00[EUR][1000 genomes]
rs7549645	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv437258	chr1:168824111-168890420	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168829800-168833600	Enhancers	HepG2	liver
2	chr1:168831400-168837000	Weak transcription	Stomach Mucosa	stomach
3	chr1:168832200-168834000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:168832400-168833800	Enhancers	Adipose Nuclei	Adipose
5	chr1:168832600-168833800	Enhancers	Fetal Stomach	stomach
6	chr1:168832800-168833400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:168832800-168833800	Enhancers	Colon Smooth Muscle	Colon
8	chr1:168832800-168833800	Enhancers	Fetal Lung	lung
9	chr1:168832800-168834200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:168832800-168834600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:168833000-168833600	Flanking Active TSS	A549	lung
12	chr1:168833200-168833400	Enhancers	Fetal Intestine Large	intestine
13	chr1:168833200-168833800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr1:168833200-168834200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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