Variant report
| Variant | rs60993038 |
|---|---|
| Chromosome Location | chr1:168809857-168809858 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10919012 | 1.00[EUR][1000 genomes] |
| rs12058057 | 1.00[EUR][1000 genomes] |
| rs12058379 | 1.00[EUR][1000 genomes] |
| rs12060178 | 1.00[EUR][1000 genomes] |
| rs12061744 | 1.00[EUR][1000 genomes] |
| rs12063868 | 1.00[EUR][1000 genomes] |
| rs12064456 | 1.00[EUR][1000 genomes] |
| rs12072744 | 1.00[EUR][1000 genomes] |
| rs12078028 | 1.00[EUR][1000 genomes] |
| rs12079471 | 1.00[EUR][1000 genomes] |
| rs12082826 | 1.00[EUR][1000 genomes] |
| rs2064472 | 1.00[EUR][1000 genomes] |
| rs2206299 | 1.00[EUR][1000 genomes] |
| rs56930710 | 1.00[EUR][1000 genomes] |
| rs57257422 | 1.00[EUR][1000 genomes] |
| rs58149156 | 1.00[EUR][1000 genomes] |
| rs59796296 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60014051 | 1.00[EUR][1000 genomes] |
| rs60151518 | 1.00[EUR][1000 genomes] |
| rs60306829 | 1.00[EUR][1000 genomes] |
| rs61365006 | 1.00[EUR][1000 genomes] |
| rs6698984 | 1.00[EUR][1000 genomes] |
| rs73032097 | 1.00[EUR][1000 genomes] |
| rs73032100 | 1.00[EUR][1000 genomes] |
| rs73034203 | 1.00[EUR][1000 genomes] |
| rs73034209 | 1.00[EUR][1000 genomes] |
| rs73034218 | 1.00[EUR][1000 genomes] |
| rs73034224 | 1.00[EUR][1000 genomes] |
| rs73034238 | 1.00[EUR][1000 genomes] |
| rs73040271 | 1.00[EUR][1000 genomes] |
| rs73042062 | 1.00[EUR][1000 genomes] |
| rs7549645 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869415 | chr1:168467284-169153863 | Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 44 gene(s) | inside rSNPs | diseases |
| 2 | nsv831847 | chr1:168669877-168850129 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv464250 | chr1:168772393-168826032 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv548145 | chr1:168772393-168826032 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:168803800-168814600 | Weak transcription | Left Ventricle | heart |
| 2 | chr1:168808600-168811400 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
| 3 | chr1:168808800-168810400 | Weak transcription | Stomach Mucosa | stomach |
