Variant report
| Variant | rs6698984 |
|---|---|
| Chromosome Location | chr1:168917623-168917624 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:168916218..168918455-chr1:169075621..169077446,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000143153 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10919012 | 1.00[EUR][1000 genomes] |
| rs12058057 | 1.00[EUR][1000 genomes] |
| rs12058379 | 1.00[EUR][1000 genomes] |
| rs12060178 | 1.00[EUR][1000 genomes] |
| rs12061744 | 1.00[EUR][1000 genomes] |
| rs12063868 | 1.00[EUR][1000 genomes] |
| rs12064456 | 1.00[EUR][1000 genomes] |
| rs12072744 | 1.00[EUR][1000 genomes] |
| rs12077900 | 1.00[EUR][1000 genomes] |
| rs12078028 | 1.00[EUR][1000 genomes] |
| rs12079471 | 1.00[EUR][1000 genomes] |
| rs12082826 | 1.00[EUR][1000 genomes] |
| rs12084554 | 1.00[EUR][1000 genomes] |
| rs16861916 | 1.00[EUR][1000 genomes] |
| rs2206299 | 1.00[EUR][1000 genomes] |
| rs56930710 | 1.00[EUR][1000 genomes] |
| rs58149156 | 1.00[EUR][1000 genomes] |
| rs59796296 | 1.00[EUR][1000 genomes] |
| rs60151518 | 1.00[EUR][1000 genomes] |
| rs60993038 | 1.00[EUR][1000 genomes] |
| rs61204485 | 1.00[EUR][1000 genomes] |
| rs6669068 | 0.92[ASW][hapmap] |
| rs73033742 | 1.00[EUR][1000 genomes] |
| rs73033743 | 1.00[EUR][1000 genomes] |
| rs73040271 | 1.00[EUR][1000 genomes] |
| rs73042062 | 1.00[EUR][1000 genomes] |
| rs7549645 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869415 | chr1:168467284-169153863 | Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 44 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
