Variant report

Variant	rs73042062
Chromosome Location	chr1:168890327-168890328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:168872513..168874576-chr1:168888387..168891154,2	MCF-7	breast:
2	chr1:168887188..168892256-chr1:169072302..169079040,8	MCF-7	breast:
3	chr1:168881969..168885467-chr1:168887830..168890604,3	K562	blood:
4	chr1:168875687..168879217-chr1:168890314..168893830,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000237707	Chromatin interaction
ENSG00000143153	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10919012	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12058057	1.00[EUR][1000 genomes]
rs12058379	1.00[EUR][1000 genomes]
rs12060178	1.00[EUR][1000 genomes]
rs12061744	1.00[EUR][1000 genomes]
rs12063868	1.00[EUR][1000 genomes]
rs12064456	1.00[EUR][1000 genomes]
rs12072744	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12078028	1.00[EUR][1000 genomes]
rs12079471	1.00[EUR][1000 genomes]
rs12082826	1.00[EUR][1000 genomes]
rs2064472	1.00[EUR][1000 genomes]
rs2206299	1.00[EUR][1000 genomes]
rs56930710	1.00[EUR][1000 genomes]
rs57257422	1.00[EUR][1000 genomes]
rs58149156	1.00[EUR][1000 genomes]
rs59796296	1.00[EUR][1000 genomes]
rs60014051	1.00[EUR][1000 genomes]
rs60151518	1.00[EUR][1000 genomes]
rs60993038	1.00[EUR][1000 genomes]
rs61204485	1.00[EUR][1000 genomes]
rs61365006	1.00[EUR][1000 genomes]
rs6698984	1.00[EUR][1000 genomes]
rs73033742	1.00[EUR][1000 genomes]
rs73033743	1.00[EUR][1000 genomes]
rs73034209	1.00[EUR][1000 genomes]
rs73034218	1.00[EUR][1000 genomes]
rs73034224	1.00[EUR][1000 genomes]
rs73034238	1.00[EUR][1000 genomes]
rs73040271	1.00[EUR][1000 genomes]
rs7549645	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv437258	chr1:168824111-168890420	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168879200-168890400	Weak transcription	Aorta	Aorta
2	chr1:168886200-168890600	Enhancers	HMEC	breast
3	chr1:168886800-168890400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr1:168887200-168891400	Enhancers	Adipose Nuclei	Adipose
5	chr1:168887800-168890400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:168887800-168891800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr1:168887800-168893400	Enhancers	HepG2	liver
8	chr1:168888000-168891800	Enhancers	Stomach Mucosa	stomach
9	chr1:168888600-168890400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr1:168888800-168891000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:168889000-168892400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:168889000-168892600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:168889200-168890400	Enhancers	Hela-S3	cervix
14	chr1:168889200-168891000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:168889200-168891600	Enhancers	Fetal Intestine Small	intestine
16	chr1:168889200-168891600	Enhancers	Fetal Stomach	stomach
17	chr1:168889200-168891800	Enhancers	Fetal Lung	lung
18	chr1:168889200-168891800	Enhancers	Pancreas	Pancrea
19	chr1:168889200-168891800	Enhancers	Right Atrium	heart
20	chr1:168889400-168890400	Enhancers	Muscle Satellite Cultured Cells	--
21	chr1:168889400-168890600	Flanking Active TSS	A549	lung
22	chr1:168889400-168891000	Enhancers	NHLF	lung
23	chr1:168889400-168891800	Enhancers	Fetal Kidney	kidney
24	chr1:168889400-168892600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr1:168889600-168891200	Weak transcription	Gastric	stomach
26	chr1:168889600-168891400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr1:168889600-168891400	Weak transcription	Left Ventricle	heart
28	chr1:168889600-168891600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr1:168889800-168890600	Flanking Active TSS	HUVEC	blood vessel
30	chr1:168890000-168890400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr1:168890000-168890400	Enhancers	Pancreatic Islets	Pancreatic Islet
32	chr1:168890000-168890400	Weak transcription	Psoas Muscle	Psoas
33	chr1:168890000-168890400	Enhancers	Small Intestine	intestine
34	chr1:168890000-168891000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr1:168890000-168891000	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr1:168890200-168890400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr1:168890200-168890600	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr1:168890200-168890800	Enhancers	Duodenum Mucosa	Duodenum

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