The 2.0 version of rSNPBase

Variant report

Variant rs12090970
Chromosome Location chr1:212564728-212564729
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:65 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:212526800-212582800 Weak transcription Fetal Brain Male brain
2 chr1:212528400-212583000 Weak transcription Fetal Kidney kidney
3 chr1:212534000-212570200 Weak transcription HSMM muscle
4 chr1:212534400-212570600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
5 chr1:212538000-212571000 Weak transcription NH-A brain
6 chr1:212540400-212575400 Weak transcription HUVEC blood vessel
7 chr1:212543600-212565200 Weak transcription Fetal Lung lung
8 chr1:212553200-212569400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr1:212553200-212578400 Weak transcription K562 blood
10 chr1:212556800-212587600 Weak transcription Small Intestine intestine
11 chr1:212558600-212578800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
12 chr1:212558600-212580000 Weak transcription Left Ventricle heart
13 chr1:212559200-212564800 Weak transcription HMEC breast
14 chr1:212560200-212578400 Weak transcription Primary T helper naive cells from peripheral blood blood
15 chr1:212560400-212570600 Weak transcription NHLF lung
16 chr1:212560400-212580200 Weak transcription Rectal Mucosa Donor 29 rectum
17 chr1:212560600-212566000 Weak transcription Duodenum Smooth Muscle Duodenum
18 chr1:212560600-212567000 Weak transcription Right Ventricle heart
19 chr1:212560600-212568000 Weak transcription Rectal Smooth Muscle rectum
20 chr1:212560600-212570000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
21 chr1:212560600-212570200 Weak transcription Brain Substantia Nigra brain
22 chr1:212560600-212578200 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr1:212560600-212578800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
24 chr1:212560600-212580200 Weak transcription HSMMtube muscle
25 chr1:212560600-212582000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
26 chr1:212560600-212582000 Weak transcription Gastric stomach
27 chr1:212561000-212575400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
28 chr1:212561000-212578000 Weak transcription Primary T killer naive cells fromperipheralblood blood
29 chr1:212561000-212579800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
30 chr1:212561000-212579800 Weak transcription Stomach Smooth Muscle stomach
31 chr1:212561000-212580000 Weak transcription Brain Hippocampus Middle brain
32 chr1:212561000-212582400 Weak transcription Aorta Aorta
33 chr1:212561200-212572000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
34 chr1:212561800-212565200 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
35 chr1:212562000-212570200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
36 chr1:212562000-212578400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
37 chr1:212562200-212564800 ZNF genes & repeats Primary hematopoietic stem cells blood
38 chr1:212562400-212564800 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
39 chr1:212562400-212564800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
40 chr1:212562400-212564800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
41 chr1:212562400-212570600 Weak transcription NHEK skin
42 chr1:212562600-212564800 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell
43 chr1:212562600-212571200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr1:212562800-212564800 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
45 chr1:212563200-212565200 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
46 chr1:212563400-212564800 ZNF genes & repeats Primary monocytes fromperipheralblood blood
47 chr1:212563600-212570000 Weak transcription GM12878-XiMat blood
48 chr1:212563800-212564800 ZNF genes & repeats iPS-15b Cell Line embryonic stem cell
49 chr1:212563800-212570000 Weak transcription Primary T helper cells fromperipheralblood blood
50 chr1:212563800-212570600 Weak transcription Primary T cells from cord blood blood

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Last update: Aug 31, 2015