The 2.0 version of rSNPBase

Variant report

Variant rs12411213
Chromosome Location chr1:212563542-212563543
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:212502600-212564600 Strong transcription Monocytes-CD14+_RO01746 blood
2 chr1:212526800-212582800 Weak transcription Fetal Brain Male brain
3 chr1:212528400-212583000 Weak transcription Fetal Kidney kidney
4 chr1:212534000-212570200 Weak transcription HSMM muscle
5 chr1:212534400-212570600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
6 chr1:212538000-212571000 Weak transcription NH-A brain
7 chr1:212540400-212575400 Weak transcription HUVEC blood vessel
8 chr1:212540600-212564000 Weak transcription Stomach Mucosa stomach
9 chr1:212543600-212565200 Weak transcription Fetal Lung lung
10 chr1:212548600-212563800 Strong transcription Primary T cells from cord blood blood
11 chr1:212553200-212569400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr1:212553200-212578400 Weak transcription K562 blood
13 chr1:212556800-212587600 Weak transcription Small Intestine intestine
14 chr1:212558600-212578800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
15 chr1:212558600-212580000 Weak transcription Left Ventricle heart
16 chr1:212559200-212564800 Weak transcription HMEC breast
17 chr1:212559400-212563600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
18 chr1:212560200-212578400 Weak transcription Primary T helper naive cells from peripheral blood blood
19 chr1:212560400-212570600 Weak transcription NHLF lung
20 chr1:212560400-212580200 Weak transcription Rectal Mucosa Donor 29 rectum
21 chr1:212560600-212563600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr1:212560600-212563600 Weak transcription Brain Inferior Temporal Lobe brain
23 chr1:212560600-212563800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
24 chr1:212560600-212563800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
25 chr1:212560600-212563800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
26 chr1:212560600-212563800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
27 chr1:212560600-212563800 Weak transcription Ovary ovary
28 chr1:212560600-212563800 Weak transcription Spleen Spleen
29 chr1:212560600-212566000 Weak transcription Duodenum Smooth Muscle Duodenum
30 chr1:212560600-212567000 Weak transcription Right Ventricle heart
31 chr1:212560600-212568000 Weak transcription Rectal Smooth Muscle rectum
32 chr1:212560600-212570000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr1:212560600-212570200 Weak transcription Brain Substantia Nigra brain
34 chr1:212560600-212578200 Weak transcription Sigmoid Colon Sigmoid Colon
35 chr1:212560600-212578800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
36 chr1:212560600-212580200 Weak transcription HSMMtube muscle
37 chr1:212560600-212582000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
38 chr1:212560600-212582000 Weak transcription Gastric stomach
39 chr1:212561000-212563600 Weak transcription Pancreas Pancrea
40 chr1:212561000-212563800 Weak transcription Duodenum Mucosa Duodenum
41 chr1:212561000-212575400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
42 chr1:212561000-212578000 Weak transcription Primary T killer naive cells fromperipheralblood blood
43 chr1:212561000-212579800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
44 chr1:212561000-212579800 Weak transcription Stomach Smooth Muscle stomach
45 chr1:212561000-212580000 Weak transcription Brain Hippocampus Middle brain
46 chr1:212561000-212582400 Weak transcription Aorta Aorta
47 chr1:212561200-212572000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
48 chr1:212561600-212563800 Weak transcription Esophagus oesophagus
49 chr1:212561800-212563800 ZNF genes & repeats Fetal Intestine Small intestine
50 chr1:212561800-212565200 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015