Variant report
| Variant | rs12092631 |
|---|---|
| Chromosome Location | chr1:216899839-216899840 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:9)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:9 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CTCF | chr1:216899820-216899970 | HPF | lung: | n/a | n/a |
| 2 | CTCF | chr1:216899800-216899950 | HMEC | breast: | n/a | n/a |
| 3 | CTCF | chr1:216899800-216899950 | RPTEC | kidney: | n/a | n/a |
| 4 | CTCF | chr1:216899820-216899970 | HCFaa | heart: | n/a | n/a |
| 5 | RAD21 | chr1:216899815-216900051 | SK-N-SH_RA | brain: | n/a | n/a |
| 6 | CTCF | chr1:216899800-216899950 | NHEK | skin: | n/a | n/a |
| 7 | CTCF | chr1:216899820-216899970 | AG04450 | lung: | n/a | n/a |
| 8 | CTCF | chr1:216899780-216899930 | HEEpiC | esophagus: | n/a | n/a |
| 9 | CTCF | chr1:216899800-216899950 | MCF-7 | breast: | n/a | n/a |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:216898478..216901280-chr17:38145496..38147429,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ESRRG | TF binding region |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10495034 | 0.84[ASW][hapmap] |
| rs11572507 | 1.00[GIH][hapmap] |
| rs11572674 | 1.00[AMR][1000 genomes] |
| rs11572693 | 1.00[GIH][hapmap] |
| rs12058262 | 1.00[AMR][1000 genomes] |
| rs12062536 | 0.90[AFR][1000 genomes] |
| rs12062617 | 1.00[AMR][1000 genomes] |
| rs12065312 | 1.00[AMR][1000 genomes] |
| rs12079096 | 1.00[AMR][1000 genomes] |
| rs12083154 | 1.00[AMR][1000 genomes] |
| rs12083476 | 1.00[AMR][1000 genomes] |
| rs12086557 | 1.00[AMR][1000 genomes] |
| rs12088824 | 1.00[AMR][1000 genomes] |
| rs12093353 | 1.00[AMR][1000 genomes] |
| rs17043790 | 1.00[AMR][1000 genomes] |
| rs17629008 | 0.84[ASW][hapmap] |
| rs4338427 | 1.00[AMR][1000 genomes] |
| rs55671306 | 1.00[AMR][1000 genomes] |
| rs56102915 | 1.00[AMR][1000 genomes] |
| rs56262359 | 1.00[AMR][1000 genomes] |
| rs56956026 | 1.00[AMR][1000 genomes] |
| rs59779978 | 1.00[AMR][1000 genomes] |
| rs60801991 | 1.00[AMR][1000 genomes] |
| rs74141639 | 1.00[AMR][1000 genomes] |
| rs74141640 | 1.00[AMR][1000 genomes] |
| rs74141641 | 1.00[AMR][1000 genomes] |
| rs74141642 | 1.00[AMR][1000 genomes] |
| rs74141643 | 1.00[AMR][1000 genomes] |
| rs74143434 | 1.00[AMR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:216897400-216901400 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 2 | chr1:216897400-216958600 | Weak transcription | Pancreas | Pancrea |
