Variant report

Variant	rs17043790
Chromosome Location	chr1:216956106-216956107
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11572674	1.00[AMR][1000 genomes]
rs12058262	1.00[AMR][1000 genomes]
rs12062617	1.00[AMR][1000 genomes]
rs12065312	1.00[AMR][1000 genomes]
rs12079096	1.00[AMR][1000 genomes]
rs12083154	1.00[AMR][1000 genomes]
rs12083476	1.00[AMR][1000 genomes]
rs12086557	1.00[AMR][1000 genomes]
rs12088824	1.00[AMR][1000 genomes]
rs12092631	1.00[AMR][1000 genomes]
rs12093353	1.00[AMR][1000 genomes]
rs17043792	1.00[YRI][hapmap]
rs4338427	1.00[AMR][1000 genomes]
rs55671306	1.00[AMR][1000 genomes]
rs56102915	1.00[AMR][1000 genomes]
rs56262359	1.00[AMR][1000 genomes]
rs56956026	1.00[AMR][1000 genomes]
rs59779978	1.00[AMR][1000 genomes]
rs60801991	1.00[AMR][1000 genomes]
rs74141639	1.00[AMR][1000 genomes]
rs74141640	1.00[AMR][1000 genomes]
rs74141641	1.00[AMR][1000 genomes]
rs74141642	1.00[AMR][1000 genomes]
rs74141643	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762162	chr1:216942781-216966140	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216897400-216958600	Weak transcription	Pancreas	Pancrea
2	chr1:216939800-216958600	Weak transcription	Psoas Muscle	Psoas
3	chr1:216952000-216958600	Weak transcription	Aorta	Aorta
4	chr1:216953400-216958600	Weak transcription	Fetal Heart	heart
5	chr1:216954200-216957800	Weak transcription	Fetal Lung	lung
6	chr1:216954600-216956200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr1:216954600-216957400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr1:216954800-216956200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr1:216954800-216956600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr1:216954800-216956800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr1:216954800-216957600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr1:216955000-216956400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr1:216955000-216958800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr1:216955600-216958600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr1:216955800-216956800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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