Variant report

Variant	rs74141642
Chromosome Location	chr1:216888216-216888217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11572674	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12058262	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12062617	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12065312	1.00[AMR][1000 genomes]
rs12079096	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12083154	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12083476	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12086557	1.00[AMR][1000 genomes]
rs12086679	0.84[AFR][1000 genomes]
rs12088824	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12092631	1.00[AMR][1000 genomes]
rs12093353	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17043790	1.00[AMR][1000 genomes]
rs4338427	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55671306	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56102915	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56262359	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56956026	1.00[AMR][1000 genomes]
rs59779978	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60801991	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74141639	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74141640	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74141641	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74141643	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74143433	1.00[AMR][1000 genomes]
rs74143434	1.00[AMR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216868200-216894000	Weak transcription	Placenta	Placenta
2	chr1:216879400-216888400	Weak transcription	Gastric	stomach
3	chr1:216883600-216894600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr1:216884600-216891800	Weak transcription	Right Ventricle	heart
5	chr1:216884600-216895200	Weak transcription	Psoas Muscle	Psoas
6	chr1:216886200-216890400	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr1:216887400-216896400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:216887600-216894200	Enhancers	Fetal Heart	heart
9	chr1:216888200-216888400	Enhancers	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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