Variant report

Variant	rs12094103
Chromosome Location	chr1:159723619-159723620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10437340	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11265264	0.88[EUR][1000 genomes]
rs11265266	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1130864	0.81[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs11811420	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12083620	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12726900	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12727021	0.81[EUR][1000 genomes]
rs12728402	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12728740	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12730243	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12734907	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12749629	0.85[ASN][1000 genomes]
rs12759988	0.93[EUR][1000 genomes]
rs12760041	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1417938	1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs3116635	0.80[EUR][1000 genomes]
rs3116636	0.80[EUR][1000 genomes]
rs3116651	0.81[EUR][1000 genomes]
rs3116653	0.81[EUR][1000 genomes]
rs3116655	0.81[EUR][1000 genomes]
rs3116656	0.81[EUR][1000 genomes]
rs4131568	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4261114	0.81[EUR][1000 genomes]
rs4512645	0.96[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6672775	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005195	chr1:159452759-159910337	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159718600-159725200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:159721400-159724000	Enhancers	Fetal Intestine Large	intestine
3	chr1:159722200-159724000	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr1:159722400-159724000	Enhancers	Hela-S3	cervix
5	chr1:159722800-159723800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:159722800-159724000	Enhancers	Fetal Intestine Small	intestine
7	chr1:159722800-159726200	Weak transcription	Adipose Nuclei	Adipose
8	chr1:159723000-159724600	Enhancers	Placenta	Placenta
9	chr1:159723200-159723800	Enhancers	Left Ventricle	heart
10	chr1:159723200-159723800	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr1:159723200-159723800	Enhancers	Right Atrium	heart
12	chr1:159723200-159723800	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr1:159723200-159723800	Enhancers	Stomach Mucosa	stomach
14	chr1:159723200-159723800	Enhancers	Spleen	Spleen
15	chr1:159723200-159724000	Enhancers	Small Intestine	intestine
16	chr1:159723400-159723800	Enhancers	Fetal Kidney	kidney
17	chr1:159723400-159723800	Enhancers	Lung	lung
18	chr1:159723400-159723800	Enhancers	Pancreas	Pancrea
19	chr1:159723400-159724000	Flanking Active TSS	Liver	Liver
20	chr1:159723400-159725200	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr1:159723600-159723800	Flanking Active TSS	Duodenum Mucosa	Duodenum
22	chr1:159723600-159726800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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