Variant report
Variant | rs3116635 |
---|---|
Chromosome Location | chr1:159686493-159686494 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:159669227..159671645-chr1:159684977..159686887,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10437340 | 0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs11265266 | 0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs1130864 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11811420 | 0.81[EUR][1000 genomes] |
rs12083620 | 0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs12094103 | 0.80[EUR][1000 genomes] |
rs12727021 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12728402 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs12728740 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs12730243 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs12734907 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs12741825 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12754745 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12755606 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12759988 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs12760041 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs1417938 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3116636 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3116651 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3116653 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3116655 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3116656 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4131568 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs4261114 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6672775 | 0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1005195 | chr1:159452759-159910337 | Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 90 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:159685600-159687000 | Enhancers | Breast Myoepithelial Primary Cells | Breast |