Variant report

Variant	rs4131568
Chromosome Location	chr1:159722056-159722057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:159720517..159722426-chr1:159893747..159895921,2	K562	blood:

Variant related genes	Relation type
ENSG00000158710	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10437340	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11265264	0.86[EUR][1000 genomes]
rs11265266	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1130864	0.84[CEU][hapmap];1.00[CHB][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs11811420	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12083620	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12094103	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12726900	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12727021	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12728402	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12728740	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12730243	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12734907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12749629	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12759988	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12760041	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1417938	0.84[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3116635	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3116636	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3116651	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3116653	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3116655	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3116656	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4261114	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4512645	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6672775	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005195	chr1:159452759-159910337	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159718600-159723600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr1:159718600-159725200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:159721000-159722200	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr1:159721000-159722400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:159721000-159722800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:159721200-159722600	Enhancers	Placenta	Placenta
7	chr1:159721200-159722800	Enhancers	Adipose Nuclei	Adipose
8	chr1:159721200-159723400	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr1:159721400-159724000	Enhancers	Fetal Intestine Large	intestine
10	chr1:159721600-159722200	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr1:159721600-159722400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr1:159721600-159722400	Enhancers	Esophagus	oesophagus
13	chr1:159721600-159722600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr1:159721600-159723200	Weak transcription	Left Ventricle	heart
15	chr1:159721800-159722400	Enhancers	HMEC	breast
16	chr1:159721800-159722600	Enhancers	Duodenum Mucosa	Duodenum
17	chr1:159722000-159722200	Enhancers	Hela-S3	cervix
18	chr1:159722000-159722600	Enhancers	Liver	Liver
19	chr1:159722000-159722600	Enhancers	HUVEC	blood vessel
20	chr1:159722000-159722800	Weak transcription	Fetal Intestine Small	intestine
21	chr1:159722000-159723400	Weak transcription	Lung	lung
22	chr1:159722000-159723400	Weak transcription	Pancreas	Pancrea

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