Variant report

Variant	rs12760041
Chromosome Location	chr1:159714035-159714036
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10437340	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11265264	0.85[EUR][1000 genomes]
rs11265266	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1130864	0.84[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11811420	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12083620	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12094103	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12726900	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12727021	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12728402	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12728740	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12730243	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12734907	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12749629	1.00[AFR][1000 genomes]
rs12759988	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1417938	0.83[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3116635	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3116636	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3116651	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3116653	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3116655	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3116656	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4131568	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.93[MKK][hapmap];0.87[TSI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4261114	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4512645	1.00[ASW][hapmap];0.92[CEU][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.93[MKK][hapmap];0.87[TSI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6672775	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005195	chr1:159452759-159910337	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12760041	LMNA	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159713600-159714200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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