Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10736411	0.94[ASN][1000 genomes]
rs11209392	0.89[AFR][1000 genomes]
rs11488279	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12074592	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12085900	0.85[AFR][1000 genomes]
rs12091279	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17130868	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17130875	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1948982	0.96[ASN][1000 genomes]
rs2456908	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2494931	0.94[ASN][1000 genomes]
rs2661461	0.94[ASN][1000 genomes]
rs2661472	0.94[ASN][1000 genomes]
rs2661474	0.94[ASN][1000 genomes]
rs2661475	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2784820	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2784822	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2842031	0.82[ASN][1000 genomes]
rs2842051	0.94[ASN][1000 genomes]
rs72938337	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72938352	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72938354	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7525958	0.96[ASN][1000 genomes]
rs9425147	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830115	chr1:69593494-69736995	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69595600-69603600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr1:69596800-69597600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr1:69596800-69597600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr1:69597000-69597800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr1:69597200-69598000	Enhancers	iPS-15b Cell Line	embryonic stem cell

Quick Search: