Variant report
| Variant | rs72938354 |
|---|---|
| Chromosome Location | chr1:69626381-69626382 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10736411 | 0.94[ASN][1000 genomes] |
| rs11488279 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12074592 | 0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12091279 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12094676 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17130868 | 0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17130875 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1948982 | 0.96[ASN][1000 genomes] |
| rs2456908 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2494931 | 0.94[ASN][1000 genomes] |
| rs2661461 | 0.94[ASN][1000 genomes] |
| rs2661472 | 0.94[ASN][1000 genomes] |
| rs2661474 | 0.94[ASN][1000 genomes] |
| rs2661475 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2784820 | 0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2784822 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2842031 | 0.82[ASN][1000 genomes] |
| rs2842051 | 0.94[ASN][1000 genomes] |
| rs72938337 | 0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72938352 | 0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7525958 | 0.96[ASN][1000 genomes] |
| rs9425147 | 0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830115 | chr1:69593494-69736995 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv3432192 | chr1:69615980-69630933 | ZNF genes & repeats Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 3 | esv3413281 | chr1:69615980-69641526 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:69626200-69626400 | Enhancers | Aorta | Aorta |
