Variant report

Variant	rs2661461
Chromosome Location	chr1:69542906-69542907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10736411	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11488279	0.94[ASN][1000 genomes]
rs12074592	0.92[ASN][1000 genomes]
rs12091279	0.94[ASN][1000 genomes]
rs12094676	0.94[ASN][1000 genomes]
rs17130868	0.94[ASN][1000 genomes]
rs17130875	0.94[ASN][1000 genomes]
rs1948982	0.90[ASN][1000 genomes]
rs2456908	0.94[ASN][1000 genomes]
rs2494931	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2661472	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2661474	1.00[ASN][1000 genomes]
rs2661475	0.94[ASN][1000 genomes]
rs2784820	0.98[ASN][1000 genomes]
rs2784822	0.94[ASN][1000 genomes]
rs2842031	0.84[ASN][1000 genomes]
rs2842051	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72938337	0.94[ASN][1000 genomes]
rs72938352	0.94[ASN][1000 genomes]
rs72938354	0.94[ASN][1000 genomes]
rs7525958	0.90[ASN][1000 genomes]
rs9425147	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508271	chr1:69522722-69547369	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69535800-69557000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:69541000-69544200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr1:69541200-69544000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr1:69541600-69543200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr1:69542000-69543200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:69542400-69543200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr1:69542400-69543800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:69542400-69544000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr1:69542600-69543200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:69542600-69543400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:69542600-69543400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr1:69542600-69544600	Enhancers	H1 Cell Line	embryonic stem cell
13	chr1:69542800-69543200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr1:69542800-69543200	Active TSS	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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