Variant report
| Variant | rs12100243 |
|---|---|
| Chromosome Location | chr13:50438748-50438749 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:50430972..50433386-chr13:50438652..50441388,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1063183 | 1.00[JPT][hapmap] |
| rs11841624 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12584069 | 1.00[JPT][hapmap] |
| rs17073655 | 1.00[JPT][hapmap] |
| rs1807033 | 1.00[JPT][hapmap] |
| rs2066540 | 1.00[JPT][hapmap] |
| rs2066552 | 1.00[JPT][hapmap] |
| rs2066553 | 1.00[JPT][hapmap] |
| rs2177313 | 1.00[JPT][hapmap] |
| rs2181267 | 1.00[JPT][hapmap] |
| rs2181268 | 1.00[JPT][hapmap] |
| rs2407882 | 1.00[JPT][hapmap] |
| rs6561571 | 1.00[JPT][hapmap] |
| rs6561572 | 1.00[JPT][hapmap] |
| rs73194473 | 0.90[ASN][1000 genomes] |
| rs732729 | 1.00[JPT][hapmap] |
| rs7334063 | 1.00[JPT][hapmap] |
| rs7982125 | 1.00[JPT][hapmap] |
| rs7984332 | 1.00[JPT][hapmap] |
| rs7986486 | 0.96[AFR][1000 genomes];0.86[AMR][1000 genomes] |
| rs7990502 | 1.00[JPT][hapmap] |
| rs7991454 | 1.00[JPT][hapmap] |
| rs7994224 | 1.00[JPT][hapmap] |
| rs7995557 | 1.00[JPT][hapmap] |
| rs7998223 | 1.00[JPT][hapmap] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:50434200-50442000 | Weak transcription | Pancreas | Pancrea |
