Variant report

Variant	rs12102086
Chromosome Location	chr15:92569023-92569024
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92562839..92565166-chr15:92567346..92570436,4	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12101386	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12101393	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12101918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12148221	1.00[ASN][1000 genomes]
rs12148486	0.83[YRI][hapmap];1.00[ASN][1000 genomes]
rs12148487	1.00[ASN][1000 genomes]
rs12148507	1.00[ASN][1000 genomes]
rs12899011	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12899322	1.00[ASN][1000 genomes]
rs12905261	0.94[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12905735	0.83[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12906208	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12910801	0.94[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16946261	0.94[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16946268	0.94[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16946270	0.94[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16946314	1.00[CEU][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28465497	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28729478	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34463319	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34781129	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35472418	1.00[ASN][1000 genomes]
rs4444317	1.00[CEU][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57163574	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58431213	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66615128	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71411124	1.00[ASN][1000 genomes]
rs71465725	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757415	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757416	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757417	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757418	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757419	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7498044	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8023391	0.94[CEU][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8037164	0.94[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8037338	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8037343	0.94[CEU][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8043343	0.94[CEU][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv984212	chr15:92562075-92570410	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92555600-92570600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr15:92555600-92576200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr15:92558000-92571200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:92562600-92570600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr15:92562800-92569600	Enhancers	Fetal Heart	heart
6	chr15:92562800-92574600	Weak transcription	Esophagus	oesophagus
7	chr15:92564600-92570000	Enhancers	Brain Hippocampus Middle	brain
8	chr15:92564600-92571400	Weak transcription	Small Intestine	intestine
9	chr15:92565200-92569200	Weak transcription	Spleen	Spleen
10	chr15:92565200-92571400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr15:92565200-92572000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr15:92565200-92573400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr15:92565400-92572400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr15:92566200-92570600	Weak transcription	Brain Angular Gyrus	brain
15	chr15:92566200-92570800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr15:92566200-92576400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr15:92567000-92569600	Enhancers	Brain Substantia Nigra	brain
18	chr15:92567200-92569800	Enhancers	Brain Cingulate Gyrus	brain
19	chr15:92567600-92571200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr15:92567600-92573000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr15:92567800-92570000	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr15:92567800-92570600	Weak transcription	Adipose Nuclei	Adipose
23	chr15:92567800-92571600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr15:92568000-92569600	Enhancers	Left Ventricle	heart
25	chr15:92568000-92569600	Enhancers	Right Atrium	heart
26	chr15:92568200-92569400	Enhancers	Ovary	ovary
27	chr15:92568200-92571000	Weak transcription	Aorta	Aorta
28	chr15:92568200-92571400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr15:92568600-92569200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr15:92568600-92569400	Enhancers	Lung	lung
31	chr15:92568600-92571800	Enhancers	Right Ventricle	heart
32	chr15:92568800-92569200	Enhancers	Fetal Lung	lung
33	chr15:92568800-92569200	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr15:92568800-92569800	Enhancers	Brain Anterior Caudate	brain
35	chr15:92568800-92571200	Weak transcription	Fetal Brain Male	brain
36	chr15:92568800-92572400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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