Variant report

Variant	rs12148221
Chromosome Location	chr15:92547356-92547357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92542461..92544269-chr15:92546881..92548703,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12101386	1.00[ASN][1000 genomes]
rs12101393	1.00[ASN][1000 genomes]
rs12101918	1.00[ASN][1000 genomes]
rs12102086	1.00[ASN][1000 genomes]
rs12148486	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12148487	0.93[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12148507	0.92[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12899011	0.80[CEU][hapmap];1.00[ASN][1000 genomes]
rs12899322	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12905261	1.00[ASN][1000 genomes]
rs12905735	1.00[ASN][1000 genomes]
rs12906208	1.00[ASN][1000 genomes]
rs12910801	1.00[ASN][1000 genomes]
rs16946261	1.00[ASN][1000 genomes]
rs16946268	0.81[CEU][hapmap];1.00[ASN][1000 genomes]
rs16946270	1.00[ASN][1000 genomes]
rs16946314	1.00[ASN][1000 genomes]
rs28465497	1.00[ASN][1000 genomes]
rs28729478	1.00[ASN][1000 genomes]
rs34463319	1.00[ASN][1000 genomes]
rs34781129	1.00[ASN][1000 genomes]
rs35079830	0.86[EUR][1000 genomes]
rs35472418	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4444317	1.00[ASN][1000 genomes]
rs57163574	1.00[ASN][1000 genomes]
rs58431213	1.00[ASN][1000 genomes]
rs66615128	1.00[ASN][1000 genomes]
rs71411124	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465725	1.00[ASN][1000 genomes]
rs72757415	1.00[ASN][1000 genomes]
rs72757416	1.00[ASN][1000 genomes]
rs72757417	1.00[ASN][1000 genomes]
rs72757418	1.00[ASN][1000 genomes]
rs72757419	1.00[ASN][1000 genomes]
rs7498044	1.00[ASN][1000 genomes]
rs8023391	1.00[ASN][1000 genomes]
rs8037164	1.00[ASN][1000 genomes]
rs8037338	1.00[ASN][1000 genomes]
rs8037343	1.00[ASN][1000 genomes]
rs8043343	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv904498	chr15:92545284-92558234	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92498200-92555000	Weak transcription	Gastric	stomach
2	chr15:92527400-92551400	Weak transcription	Aorta	Aorta
3	chr15:92535600-92548000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr15:92536000-92547400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr15:92536400-92548600	Weak transcription	Esophagus	oesophagus
6	chr15:92538200-92554800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr15:92543000-92552400	Weak transcription	Pancreas	Pancrea
8	chr15:92543600-92550800	Enhancers	Brain Substantia Nigra	brain
9	chr15:92544000-92547400	Enhancers	Right Ventricle	heart
10	chr15:92544200-92547400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr15:92544200-92554800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr15:92544400-92554800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr15:92544600-92548600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr15:92544800-92548200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr15:92544800-92548400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr15:92544800-92548400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr15:92544800-92548600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:92544800-92548600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:92544800-92548600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:92544800-92551200	Weak transcription	Ovary	ovary
21	chr15:92544800-92552400	Weak transcription	Spleen	Spleen
22	chr15:92544800-92554200	Weak transcription	Fetal Brain Female	brain
23	chr15:92544800-92554800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr15:92545000-92548200	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr15:92545000-92548200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr15:92545000-92548400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr15:92545000-92548400	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr15:92545400-92554800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr15:92545600-92548400	Enhancers	Fetal Heart	heart
30	chr15:92545600-92552400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr15:92546200-92548200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr15:92546400-92548200	Enhancers	Brain Cingulate Gyrus	brain
33	chr15:92546400-92551800	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr15:92546600-92547400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr15:92546600-92547800	Enhancers	Left Ventricle	heart
36	chr15:92546600-92548000	Enhancers	Brain Anterior Caudate	brain
37	chr15:92546800-92547400	Enhancers	Psoas Muscle	Psoas
38	chr15:92546800-92547600	Enhancers	Right Atrium	heart
39	chr15:92546800-92547800	Enhancers	Brain Angular Gyrus	brain
40	chr15:92546800-92551000	Enhancers	Brain Hippocampus Middle	brain
41	chr15:92547000-92547400	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr15:92547000-92547600	Enhancers	Primary T cells fromperipheralblood	blood
43	chr15:92547000-92547600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr15:92547000-92547600	Enhancers	Lung	lung
45	chr15:92547000-92547600	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr15:92547000-92553400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr15:92547200-92547400	Enhancers	Small Intestine	intestine
48	chr15:92547200-92547600	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr15:92547200-92549000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
50	chr15:92547200-92552000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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