Variant report

Variant	rs34781129
Chromosome Location	chr15:92565469-92565470
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12101386	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12101393	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12101918	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12102086	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12148221	1.00[ASN][1000 genomes]
rs12148486	1.00[ASN][1000 genomes]
rs12148487	1.00[ASN][1000 genomes]
rs12148507	1.00[ASN][1000 genomes]
rs12899011	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12899322	1.00[ASN][1000 genomes]
rs12905261	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12905735	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12906208	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12910801	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16946261	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16946268	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16946270	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16946314	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28465497	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28729478	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34463319	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35079830	0.86[EUR][1000 genomes]
rs35472418	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4444317	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57163574	1.00[ASN][1000 genomes]
rs58431213	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs66615128	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71411124	1.00[ASN][1000 genomes]
rs71465725	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72757415	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72757416	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72757417	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72757418	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72757419	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7498044	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8023391	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8037164	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8037338	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8037343	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8043343	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv984212	chr15:92562075-92570410	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92554200-92566200	Enhancers	Right Atrium	heart
2	chr15:92555600-92565600	Weak transcription	Gastric	stomach
3	chr15:92555600-92570600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr15:92555600-92576200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr15:92557800-92567000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:92558000-92571200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:92558600-92568600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr15:92562000-92567800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:92562600-92570600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr15:92562800-92565800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:92562800-92566400	Enhancers	Adipose Nuclei	Adipose
12	chr15:92562800-92569600	Enhancers	Fetal Heart	heart
13	chr15:92562800-92574600	Weak transcription	Esophagus	oesophagus
14	chr15:92563400-92566000	Weak transcription	Left Ventricle	heart
15	chr15:92563800-92567000	Weak transcription	Brain Substantia Nigra	brain
16	chr15:92563800-92568200	Enhancers	Aorta	Aorta
17	chr15:92564000-92566200	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr15:92564000-92567200	Weak transcription	Brain Cingulate Gyrus	brain
19	chr15:92564400-92565800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:92564600-92570000	Enhancers	Brain Hippocampus Middle	brain
21	chr15:92564600-92571400	Weak transcription	Small Intestine	intestine
22	chr15:92564800-92565600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr15:92564800-92566600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:92564800-92567000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr15:92565000-92566200	Enhancers	Brain Angular Gyrus	brain
26	chr15:92565200-92565600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr15:92565200-92565600	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr15:92565200-92566000	Weak transcription	Lung	lung
29	chr15:92565200-92566000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr15:92565200-92566000	Weak transcription	Right Ventricle	heart
31	chr15:92565200-92569200	Weak transcription	Spleen	Spleen
32	chr15:92565200-92571400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr15:92565200-92572000	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr15:92565200-92573400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr15:92565400-92565800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr15:92565400-92567200	Weak transcription	Brain Anterior Caudate	brain
37	chr15:92565400-92568200	Weak transcription	Ovary	ovary
38	chr15:92565400-92572400	Weak transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links