Variant report

Variant	rs12906208
Chromosome Location	chr15:92571691-92571692
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92567168..92568935-chr15:92570606..92572185,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12101386	1.00[CEU][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12101393	1.00[CEU][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12101918	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12102086	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12148221	1.00[ASN][1000 genomes]
rs12148486	1.00[ASN][1000 genomes]
rs12148487	1.00[ASN][1000 genomes]
rs12148507	1.00[ASN][1000 genomes]
rs12899011	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12899322	1.00[ASN][1000 genomes]
rs12905261	0.94[CEU][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12905735	0.83[CEU][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12910801	0.94[CEU][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16946261	0.94[CEU][hapmap];0.84[YRI][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16946268	0.94[CEU][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16946270	0.94[CEU][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16946314	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28465497	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28729478	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34463319	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34781129	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35472418	1.00[ASN][1000 genomes]
rs4444317	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57163574	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58431213	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66615128	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71411124	1.00[ASN][1000 genomes]
rs71465725	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757415	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757416	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757417	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757418	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757419	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7498044	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8023391	0.94[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8037164	0.94[CEU][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8037338	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8037343	0.94[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8043343	0.94[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92555600-92576200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr15:92562800-92574600	Weak transcription	Esophagus	oesophagus
3	chr15:92565200-92572000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr15:92565200-92573400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr15:92565400-92572400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr15:92566200-92576400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr15:92567600-92573000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr15:92568600-92571800	Enhancers	Right Ventricle	heart
9	chr15:92568800-92572400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:92569200-92572600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr15:92569400-92573000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:92569800-92573000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr15:92569800-92576600	Weak transcription	Brain Anterior Caudate	brain
14	chr15:92570400-92572000	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr15:92570600-92572200	Enhancers	Brain Angular Gyrus	brain
16	chr15:92570600-92572600	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr15:92570600-92574200	Enhancers	Adipose Nuclei	Adipose
18	chr15:92570600-92578000	Enhancers	Right Atrium	heart
19	chr15:92570800-92571800	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr15:92570800-92573800	Enhancers	Fetal Lung	lung
21	chr15:92570800-92573800	Enhancers	Left Ventricle	heart
22	chr15:92570800-92574000	Enhancers	Ovary	ovary
23	chr15:92571000-92571800	Enhancers	Aorta	Aorta
24	chr15:92571000-92574000	Weak transcription	Pancreas	Pancrea
25	chr15:92571000-92576800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr15:92571000-92578000	Enhancers	Brain Hippocampus Middle	brain
27	chr15:92571200-92571800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr15:92571200-92572400	Enhancers	Fetal Heart	heart
29	chr15:92571200-92572800	Enhancers	Fetal Brain Male	brain
30	chr15:92571200-92575400	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr15:92571400-92571800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr15:92571400-92571800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
33	chr15:92571400-92572200	Enhancers	Small Intestine	intestine
34	chr15:92571400-92572800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
35	chr15:92571400-92573200	Weak transcription	Brain Substantia Nigra	brain
36	chr15:92571400-92573400	Enhancers	Fetal Muscle Leg	muscle
37	chr15:92571400-92574600	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr15:92571600-92571800	Enhancers	Fetal Intestine Large	intestine
39	chr15:92571600-92572400	Active TSS	Stomach Smooth Muscle	stomach
40	chr15:92571600-92573000	Weak transcription	Spleen	Spleen
41	chr15:92571600-92573200	Weak transcription	Lung	lung
42	chr15:92571600-92573600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links