Variant report
| Variant | rs12108329 |
|---|---|
| Chromosome Location | chr4:84839351-84839352 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:84551173..84553791-chr4:84838871..84841214,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs11935762 | 1.00[EUR][1000 genomes] |
| rs11936694 | 1.00[EUR][1000 genomes] |
| rs11936831 | 1.00[EUR][1000 genomes] |
| rs1505785 | 1.00[EUR][1000 genomes] |
| rs1505787 | 1.00[EUR][1000 genomes] |
| rs1587946 | 1.00[EUR][1000 genomes] |
| rs16999591 | 1.00[EUR][1000 genomes] |
| rs17007410 | 1.00[EUR][1000 genomes] |
| rs17007475 | 1.00[EUR][1000 genomes] |
| rs17007479 | 1.00[EUR][1000 genomes] |
| rs17007495 | 1.00[EUR][1000 genomes] |
| rs17007528 | 1.00[EUR][1000 genomes] |
| rs17007674 | 1.00[EUR][1000 genomes] |
| rs17007731 | 1.00[EUR][1000 genomes] |
| rs17007745 | 1.00[EUR][1000 genomes] |
| rs17007746 | 1.00[EUR][1000 genomes] |
| rs1847824 | 1.00[EUR][1000 genomes] |
| rs59145586 | 1.00[EUR][1000 genomes] |
| rs6812215 | 1.00[EUR][1000 genomes] |
| rs6813078 | 1.00[EUR][1000 genomes] |
| rs6814040 | 1.00[EUR][1000 genomes] |
| rs6818187 | 1.00[EUR][1000 genomes] |
| rs6835964 | 1.00[EUR][1000 genomes] |
| rs6840243 | 1.00[TSI][hapmap] |
| rs6843921 | 1.00[EUR][1000 genomes] |
| rs6857832 | 1.00[EUR][1000 genomes] |
| rs72943165 | 1.00[EUR][1000 genomes] |
| rs72943172 | 1.00[EUR][1000 genomes] |
| rs72943664 | 1.00[EUR][1000 genomes] |
| rs72943666 | 1.00[EUR][1000 genomes] |
| rs7672164 | 1.00[EUR][1000 genomes] |
| rs7677081 | 1.00[EUR][1000 genomes] |
| rs7683613 | 1.00[EUR][1000 genomes] |
| rs9307832 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879512 | chr4:84374692-85090749 | Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 29 gene(s) | inside rSNPs | diseases |
| 2 | nsv1010009 | chr4:84469896-84882528 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv879513 | chr4:84612373-84905452 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:84837400-84842800 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
| 2 | chr4:84839200-84839600 | Weak transcription | Psoas Muscle | Psoas |
| 3 | chr4:84839200-84840000 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
