Variant report

Variant	rs1587946
Chromosome Location	chr4:84811544-84811545
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11935762	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11936694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11936831	1.00[EUR][1000 genomes]
rs12108329	1.00[EUR][1000 genomes]
rs1505785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1505787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16999591	1.00[EUR][1000 genomes]
rs17007410	1.00[EUR][1000 genomes]
rs17007475	1.00[EUR][1000 genomes]
rs17007479	1.00[EUR][1000 genomes]
rs17007495	1.00[EUR][1000 genomes]
rs17007528	1.00[EUR][1000 genomes]
rs17007674	1.00[EUR][1000 genomes]
rs17007731	1.00[EUR][1000 genomes]
rs17007745	1.00[EUR][1000 genomes]
rs17007746	1.00[EUR][1000 genomes]
rs1847824	1.00[EUR][1000 genomes]
rs59145586	1.00[EUR][1000 genomes]
rs6812215	1.00[EUR][1000 genomes]
rs6813078	1.00[EUR][1000 genomes]
rs6814040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6818187	1.00[EUR][1000 genomes]
rs6835964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6838554	0.83[AMR][1000 genomes]
rs6843921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6857832	1.00[EUR][1000 genomes]
rs72943165	1.00[EUR][1000 genomes]
rs72943172	1.00[EUR][1000 genomes]
rs72943664	1.00[EUR][1000 genomes]
rs72943666	1.00[EUR][1000 genomes]
rs7672164	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7677081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7683613	1.00[EUR][1000 genomes]
rs9307832	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1010009	chr4:84469896-84882528	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv879513	chr4:84612373-84905452	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1846043	chr4:84792366-84829877	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:84807200-84811800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr4:84809200-84811800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:84810600-84812400	Enhancers	Osteobl	bone
4	chr4:84810800-84812200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr4:84810800-84812200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr4:84810800-84812600	Enhancers	NHEK	skin
7	chr4:84811400-84811600	Flanking Active TSS	A549	lung
8	chr4:84811400-84811600	Flanking Active TSS	NH-A	brain
9	chr4:84811400-84812200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:84811400-84812400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:84811400-84812400	Enhancers	Hela-S3	cervix

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