Variant report

Variant	rs17007674
Chromosome Location	chr4:84797079-84797080
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10013930	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11935762	1.00[EUR][1000 genomes]
rs11936694	1.00[EUR][1000 genomes]
rs11936831	1.00[EUR][1000 genomes]
rs12108329	1.00[EUR][1000 genomes]
rs1505785	1.00[EUR][1000 genomes]
rs1505787	1.00[EUR][1000 genomes]
rs1587946	1.00[EUR][1000 genomes]
rs16999591	1.00[EUR][1000 genomes]
rs17007410	1.00[EUR][1000 genomes]
rs17007475	1.00[EUR][1000 genomes]
rs17007479	1.00[EUR][1000 genomes]
rs17007495	1.00[EUR][1000 genomes]
rs17007528	1.00[EUR][1000 genomes]
rs17007607	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17007731	1.00[EUR][1000 genomes]
rs17007745	1.00[EUR][1000 genomes]
rs17007746	1.00[EUR][1000 genomes]
rs1847824	1.00[EUR][1000 genomes]
rs28376947	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs28473126	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs34489485	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs59145586	1.00[EUR][1000 genomes]
rs6812215	1.00[EUR][1000 genomes]
rs6813078	1.00[EUR][1000 genomes]
rs6814040	1.00[EUR][1000 genomes]
rs6818187	1.00[EUR][1000 genomes]
rs6835964	1.00[EUR][1000 genomes]
rs6840243	1.00[TSI][hapmap]
rs6843921	1.00[EUR][1000 genomes]
rs6857832	1.00[EUR][1000 genomes]
rs72943165	1.00[EUR][1000 genomes]
rs72943172	1.00[EUR][1000 genomes]
rs72943664	1.00[EUR][1000 genomes]
rs72943666	1.00[EUR][1000 genomes]
rs7672164	1.00[EUR][1000 genomes]
rs7677081	1.00[EUR][1000 genomes]
rs7683613	1.00[EUR][1000 genomes]
rs9307831	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9307832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9991447	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1010009	chr4:84469896-84882528	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv879513	chr4:84612373-84905452	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1846043	chr4:84792366-84829877	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:84794400-84797200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:84795600-84797200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:84796000-84797200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:84796600-84797200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:84797000-84797800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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