Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:84831429..84833032-chr4:84843492..84846042,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11935762	1.00[EUR][1000 genomes]
rs11936694	1.00[EUR][1000 genomes]
rs11936831	1.00[EUR][1000 genomes]
rs12108329	1.00[EUR][1000 genomes]
rs1505785	1.00[EUR][1000 genomes]
rs1505787	1.00[EUR][1000 genomes]
rs1587946	1.00[EUR][1000 genomes]
rs16999591	1.00[EUR][1000 genomes]
rs17007410	1.00[EUR][1000 genomes]
rs17007475	1.00[EUR][1000 genomes]
rs17007479	1.00[EUR][1000 genomes]
rs17007495	1.00[EUR][1000 genomes]
rs17007528	1.00[EUR][1000 genomes]
rs17007674	1.00[EUR][1000 genomes]
rs17007731	1.00[EUR][1000 genomes]
rs17007745	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17007746	1.00[EUR][1000 genomes]
rs1847824	1.00[EUR][1000 genomes]
rs59145586	1.00[EUR][1000 genomes]
rs6813078	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6814040	1.00[EUR][1000 genomes]
rs6818187	1.00[EUR][1000 genomes]
rs6835964	1.00[EUR][1000 genomes]
rs6843921	1.00[EUR][1000 genomes]
rs6857832	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72943165	1.00[EUR][1000 genomes]
rs72943172	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72943664	1.00[EUR][1000 genomes]
rs72943666	1.00[EUR][1000 genomes]
rs7672164	1.00[EUR][1000 genomes]
rs7677081	1.00[EUR][1000 genomes]
rs7683613	1.00[EUR][1000 genomes]
rs9307832	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1010009	chr4:84469896-84882528	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv879513	chr4:84612373-84905452	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:84842800-84846000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr4:84843200-84845800	Enhancers	HUES64 Cell Line	embryonic stem cell

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