The 2.0 version of rSNPBase

Variant report

Variant rs12122497
Chromosome Location chr1:165635944-165635945
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:165606200-165659600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:165618000-165638600 Strong transcription Cortex derived primary cultured neurospheres brain
3 chr1:165618200-165652400 Strong transcription Fetal Muscle Leg muscle
4 chr1:165618800-165638600 Strong transcription Fetal Intestine Large intestine
5 chr1:165619000-165642600 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
6 chr1:165619000-165643600 Strong transcription Fetal Muscle Trunk muscle
7 chr1:165619200-165648800 Strong transcription Liver Liver
8 chr1:165619400-165636200 Strong transcription Adipose Nuclei Adipose
9 chr1:165619600-165642600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr1:165619600-165653200 Strong transcription Breast Myoepithelial Primary Cells Breast
11 chr1:165623400-165653000 Weak transcription Stomach Mucosa stomach
12 chr1:165623800-165636400 Weak transcription Pancreatic Islets Pancreatic Islet
13 chr1:165627200-165637400 Weak transcription Right Ventricle heart
14 chr1:165627600-165636600 Weak transcription Psoas Muscle Psoas
15 chr1:165628000-165646600 Strong transcription Primary T cells from cord blood blood
16 chr1:165628800-165639000 Strong transcription Rectal Mucosa Donor 29 rectum
17 chr1:165628800-165639000 Strong transcription Rectal Mucosa Donor 31 rectum
18 chr1:165628800-165640200 Strong transcription Primary neutrophils fromperipheralblood blood
19 chr1:165628800-165642000 Strong transcription HSMM muscle
20 chr1:165628800-165642200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
21 chr1:165628800-165644000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
22 chr1:165628800-165646800 Strong transcription Primary T helper cells fromperipheralblood blood
23 chr1:165628800-165646800 Strong transcription Primary T regulatory cells fromperipheralblood blood
24 chr1:165629000-165638600 Strong transcription Brain Substantia Nigra brain
25 chr1:165629000-165639400 Strong transcription Placenta Placenta
26 chr1:165629000-165653600 Strong transcription Dnd41 blood
27 chr1:165629200-165638600 Strong transcription Sigmoid Colon Sigmoid Colon
28 chr1:165629200-165638800 Strong transcription HUES64 Cell Line embryonic stem cell
29 chr1:165629200-165641600 Strong transcription Duodenum Mucosa Duodenum
30 chr1:165629200-165642800 Strong transcription Primary hematopoietic stem cells blood
31 chr1:165629200-165643600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr1:165629400-165642200 Strong transcription HUES6 Cell Line embryonic stem cell
33 chr1:165629400-165642600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr1:165629400-165652800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
35 chr1:165629400-165654200 Weak transcription iPS-15b Cell Line embryonic stem cell
36 chr1:165629400-165656000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr1:165629600-165638200 Strong transcription Esophagus oesophagus
38 chr1:165629600-165638600 Strong transcription Fetal Brain Female brain
39 chr1:165629600-165641800 Strong transcription Fetal Lung lung
40 chr1:165629600-165643000 Strong transcription Primary B cells from cord blood blood
41 chr1:165629600-165654800 Strong transcription Primary T cells fromperipheralblood blood
42 chr1:165629800-165638600 Strong transcription Brain Anterior Caudate brain
43 chr1:165629800-165638800 Strong transcription Primary T helper naive cells fromperipheralblood blood
44 chr1:165629800-165642000 Strong transcription Primary T helper cells PMA-I stimulated --
45 chr1:165629800-165643600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr1:165629800-165654800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
47 chr1:165630000-165638600 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
48 chr1:165630000-165638600 Strong transcription Duodenum Smooth Muscle Duodenum
49 chr1:165630000-165639000 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
50 chr1:165630000-165642200 Strong transcription Fetal Thymus thymus

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Last update: Aug 31, 2015