Variant report

Variant	rs12081903
Chromosome Location	chr1:165645370-165645371
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr1:165645080-165645376	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000225272	TF binding region

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10157944	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10494446	0.83[CHB][hapmap]
rs10494447	0.83[CHB][hapmap]
rs10800123	0.83[CHB][hapmap]
rs10800124	0.85[ASN][1000 genomes]
rs10800125	1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs10918229	0.83[CHB][hapmap]
rs10918232	0.85[ASN][1000 genomes]
rs10918233	0.83[ASN][1000 genomes]
rs10918235	0.83[CHB][hapmap]
rs10918239	0.83[CHB][hapmap]
rs12065621	1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12069198	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12072628	0.82[ASN][1000 genomes]
rs12072634	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12080699	1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12083091	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12083232	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12084651	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12122497	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12123278	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1538113	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17417191	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17450889	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1878074	0.83[CHB][hapmap]
rs1878075	0.83[CHB][hapmap]
rs2050619	0.83[CHB][hapmap]
rs2176151	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2297762	0.83[CHB][hapmap]
rs2297763	1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs2348727	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2348728	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2348729	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3795540	0.83[CHB][hapmap]
rs3820362	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4147604	0.83[CHB][hapmap]
rs4147605	0.83[CHB][hapmap]
rs4147606	0.83[CHB][hapmap]
rs4147610	0.91[CHB][hapmap]
rs4147611	0.83[CHB][hapmap]
rs4646895	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4646896	1.00[CEU][hapmap];0.91[CHB][hapmap];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4646897	0.96[CEU][hapmap];1.00[CHB][hapmap];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56279704	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61800398	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61800420	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61800421	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6662419	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6669697	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6683651	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6683665	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6683969	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7525102	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7534437	0.96[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8133	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs884121	0.84[ASN][1000 genomes]
rs9333483	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv946481	chr1:165639060-165646269	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165606200-165659600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:165618200-165652400	Strong transcription	Fetal Muscle Leg	muscle
3	chr1:165619200-165648800	Strong transcription	Liver	Liver
4	chr1:165619600-165653200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:165623400-165653000	Weak transcription	Stomach Mucosa	stomach
6	chr1:165628000-165646600	Strong transcription	Primary T cells from cord blood	blood
7	chr1:165628800-165646800	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr1:165628800-165646800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr1:165629000-165653600	Strong transcription	Dnd41	blood
10	chr1:165629400-165652800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:165629400-165654200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr1:165629400-165656000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr1:165629600-165654800	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr1:165629800-165654800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr1:165630000-165654400	Strong transcription	Primary B cells from peripheral blood	blood
16	chr1:165632200-165645400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr1:165632400-165649400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr1:165633600-165651200	Weak transcription	Pancreas	Pancrea
19	chr1:165633600-165651400	Weak transcription	Gastric	stomach
20	chr1:165633800-165651000	Weak transcription	Small Intestine	intestine
21	chr1:165634400-165651800	Weak transcription	Fetal Heart	heart
22	chr1:165635200-165647800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr1:165635800-165645600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr1:165635800-165648600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr1:165636000-165652400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr1:165637800-165645400	Weak transcription	Right Ventricle	heart
27	chr1:165637800-165645400	Weak transcription	Spleen	Spleen
28	chr1:165637800-165645400	Weak transcription	HSMMtube	muscle
29	chr1:165637800-165648600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr1:165637800-165649200	Weak transcription	Aorta	Aorta
31	chr1:165637800-165651200	Weak transcription	NHEK	skin
32	chr1:165637800-165653400	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr1:165638000-165645400	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr1:165638000-165645400	Weak transcription	Lung	lung
35	chr1:165638000-165647800	Weak transcription	HMEC	breast
36	chr1:165638000-165666800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr1:165638200-165645400	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr1:165638400-165645400	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr1:165638400-165648000	Weak transcription	HepG2	liver
40	chr1:165638600-165645400	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr1:165638600-165647800	Weak transcription	Brain Anterior Caudate	brain
42	chr1:165638600-165647800	Weak transcription	K562	blood
43	chr1:165638600-165649000	Weak transcription	Psoas Muscle	Psoas
44	chr1:165638600-165665400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr1:165638800-165647600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr1:165639000-165645400	Weak transcription	NHLF	lung
47	chr1:165639200-165659800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr1:165639400-165645400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr1:165639400-165645600	Weak transcription	Colon Smooth Muscle	Colon
50	chr1:165640000-165652800	Strong transcription	Fetal Intestine Large	intestine

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