Variant report

Variant	rs2297762
Chromosome Location	chr1:165622679-165622680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165615940..165619715-chr1:165622033..165624216,3	K562	blood:

Variant related genes	Relation type
ENSG00000143198	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10494446	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10494447	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10800122	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10800123	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10800124	0.83[ASN][1000 genomes]
rs10800125	0.83[CHB][hapmap];0.83[ASN][1000 genomes]
rs10800126	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10918229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10918230	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10918231	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10918232	0.83[ASN][1000 genomes]
rs10918233	0.81[ASN][1000 genomes]
rs10918235	0.92[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10918238	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10918239	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10918240	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12065621	0.83[CHB][hapmap];0.92[JPT][hapmap]
rs12072628	0.85[ASN][1000 genomes]
rs12072634	0.83[CHB][hapmap]
rs12072664	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12080699	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs12081903	0.83[CHB][hapmap]
rs12670	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1878074	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1878075	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2050619	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2184918	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2297763	0.83[CHB][hapmap]
rs2297765	0.92[CHB][hapmap];0.85[ASN][1000 genomes]
rs2348727	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs2348728	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs3795540	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3820362	0.83[CHB][hapmap]
rs4147603	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4147604	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4147605	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4147606	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4147607	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4147608	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4147609	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4147610	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4147611	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4427389	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4539111	1.00[CEU][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4581256	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4590653	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4638106	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4646895	0.83[CHB][hapmap]
rs4646897	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs6657651	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6667075	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6683969	0.83[CHB][hapmap]
rs7534437	0.92[CHB][hapmap]
rs8133	0.83[CHB][hapmap]
rs884121	0.84[ASN][1000 genomes]
rs9333483	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9333489	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9333490	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9333494	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9333496	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165602000-165622800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr1:165602200-165624200	Weak transcription	Dnd41	blood
3	chr1:165603800-165624200	Weak transcription	Brain Germinal Matrix	brain
4	chr1:165603800-165631200	Weak transcription	Fetal Kidney	kidney
5	chr1:165604400-165628000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:165604800-165623000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:165604800-165628400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr1:165604800-165632200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:165605200-165628800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr1:165606200-165659600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:165606800-165622800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr1:165607200-165623000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr1:165610600-165630800	Weak transcription	Small Intestine	intestine
14	chr1:165615200-165628400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:165615400-165622800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr1:165615400-165630000	Weak transcription	GM12878-XiMat	blood
17	chr1:165615600-165629600	Weak transcription	Primary B cells from cord blood	blood
18	chr1:165615600-165630200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr1:165615600-165631000	Weak transcription	NHEK	skin
20	chr1:165615800-165631000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr1:165616400-165622800	Weak transcription	Spleen	Spleen
22	chr1:165616400-165630200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr1:165616400-165632000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr1:165616800-165623000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr1:165617000-165630000	Weak transcription	Thymus	Thymus
26	chr1:165617000-165631200	Strong transcription	Fetal Stomach	stomach
27	chr1:165617400-165625800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr1:165617400-165627800	Strong transcription	Fetal Intestine Small	intestine
29	chr1:165617600-165623400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr1:165617600-165627800	Strong transcription	Lung	lung
31	chr1:165618000-165626200	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr1:165618000-165627600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr1:165618000-165631000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr1:165618000-165638600	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr1:165618200-165625400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr1:165618200-165652400	Strong transcription	Fetal Muscle Leg	muscle
37	chr1:165618400-165626400	Strong transcription	Fetal Lung	lung
38	chr1:165618400-165627200	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr1:165618400-165627200	Strong transcription	Sigmoid Colon	Sigmoid Colon
40	chr1:165618600-165627200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr1:165618600-165627800	Strong transcription	Duodenum Mucosa	Duodenum
42	chr1:165618600-165634800	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr1:165618800-165625200	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr1:165618800-165630800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr1:165618800-165638600	Strong transcription	Fetal Intestine Large	intestine
46	chr1:165619000-165623400	Strong transcription	Stomach Mucosa	stomach
47	chr1:165619000-165624600	Strong transcription	Colonic Mucosa	Colon
48	chr1:165619000-165627000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr1:165619000-165627200	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr1:165619000-165627400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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