Variant report

Variant	rs12670
Chromosome Location	chr1:165631670-165631671
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165631082..165632723-chr1:165632759..165634670,2	K562	blood:

Variant related genes	Relation type
ENSG00000143149	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10494446	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10494447	0.87[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.83[MEX][hapmap];0.87[MKK][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10800122	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10800123	0.87[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.83[MEX][hapmap];0.87[MKK][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10800126	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10918229	0.87[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];0.94[TSI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10918230	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10918231	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10918235	0.91[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10918238	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10918239	1.00[ASW][hapmap];0.91[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];0.84[GIH][hapmap];0.85[JPT][hapmap];0.97[LWK][hapmap];0.87[MEX][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10918240	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12065621	0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs12072664	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12080699	0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs12123278	0.82[ASN][1000 genomes]
rs1878074	0.87[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.83[MEX][hapmap];0.87[MKK][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1878075	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2050619	1.00[ASW][hapmap];0.91[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.87[MEX][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2176151	0.82[ASN][1000 genomes]
rs2184918	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2297762	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2297765	0.84[CHB][hapmap]
rs2348727	0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs2348728	0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs2348729	0.82[ASN][1000 genomes]
rs3795540	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4147603	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4147604	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4147605	0.87[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.83[MEX][hapmap];0.87[MKK][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4147606	0.87[ASW][hapmap];0.91[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.87[MKK][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4147607	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4147608	0.83[AMR][1000 genomes]
rs4147609	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4147610	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4147611	0.87[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.83[MEX][hapmap];0.87[MKK][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4427389	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4539111	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4581256	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4590653	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4638106	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4646896	0.84[CHB][hapmap]
rs4646897	0.81[JPT][hapmap]
rs6657651	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6667075	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7534437	0.84[CHB][hapmap]
rs884121	0.87[ASN][1000 genomes]
rs9333483	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.83[MEX][hapmap];0.85[MKK][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9333489	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9333490	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9333494	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9333496	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165604800-165632200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:165606200-165659600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:165616400-165632000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr1:165618000-165638600	Strong transcription	Cortex derived primary cultured neurospheres	brain
5	chr1:165618200-165652400	Strong transcription	Fetal Muscle Leg	muscle
6	chr1:165618600-165634800	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr1:165618800-165638600	Strong transcription	Fetal Intestine Large	intestine
8	chr1:165619000-165635000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:165619000-165642600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr1:165619000-165643600	Strong transcription	Fetal Muscle Trunk	muscle
11	chr1:165619200-165634200	Strong transcription	Stomach Smooth Muscle	stomach
12	chr1:165619200-165648800	Strong transcription	Liver	Liver
13	chr1:165619400-165636200	Strong transcription	Adipose Nuclei	Adipose
14	chr1:165619600-165642600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:165619600-165653200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr1:165621000-165634400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:165621600-165632200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr1:165623400-165653000	Weak transcription	Stomach Mucosa	stomach
19	chr1:165623800-165631800	Weak transcription	HUVEC	blood vessel
20	chr1:165623800-165636400	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr1:165624600-165632800	Weak transcription	Colonic Mucosa	Colon
22	chr1:165625000-165632200	Weak transcription	Brain Angular Gyrus	brain
23	chr1:165625600-165631800	Weak transcription	Fetal Brain Male	brain
24	chr1:165627200-165637400	Weak transcription	Right Ventricle	heart
25	chr1:165627600-165632000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr1:165627600-165636600	Weak transcription	Psoas Muscle	Psoas
27	chr1:165628000-165633200	Weak transcription	Colon Smooth Muscle	Colon
28	chr1:165628000-165634600	Strong transcription	Brain Hippocampus Middle	brain
29	chr1:165628000-165646600	Strong transcription	Primary T cells from cord blood	blood
30	chr1:165628600-165634400	Strong transcription	Lung	lung
31	chr1:165628600-165634400	Strong transcription	Skeletal Muscle Female	skeletal muscle
32	chr1:165628800-165632200	Strong transcription	Left Ventricle	heart
33	chr1:165628800-165634400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr1:165628800-165634400	Strong transcription	Brain Cingulate Gyrus	brain
35	chr1:165628800-165634600	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr1:165628800-165639000	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr1:165628800-165639000	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr1:165628800-165640200	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr1:165628800-165642000	Strong transcription	HSMM	muscle
40	chr1:165628800-165642200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr1:165628800-165644000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr1:165628800-165646800	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr1:165628800-165646800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr1:165629000-165634800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr1:165629000-165635400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr1:165629000-165638600	Strong transcription	Brain Substantia Nigra	brain
47	chr1:165629000-165639400	Strong transcription	Placenta	Placenta
48	chr1:165629000-165653600	Strong transcription	Dnd41	blood
49	chr1:165629200-165633600	Strong transcription	Gastric	stomach
50	chr1:165629200-165634200	Strong transcription	Skeletal Muscle Male	skeletal muscle

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