Variant report

Variant	rs4147609
Chromosome Location	chr1:165623810-165623811
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:165607099..165608797-chr1:165623169..165624684,2	K562	blood:
2	chr1:165623129..165624677-chr1:165628982..165631054,2	K562	blood:
3	chr1:165615940..165619715-chr1:165622033..165624216,3	K562	blood:

Variant related genes	Relation type
ENSG00000143198	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10494446	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10494447	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10800122	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10800123	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10800126	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10918229	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10918230	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10918231	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10918235	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10918238	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10918239	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10918240	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12072664	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12670	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1878074	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1878075	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2050619	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2184918	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2297762	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3795540	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4147603	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4147604	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4147605	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4147606	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4147607	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4147608	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4147610	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4147611	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4427389	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4539111	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4581256	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4590653	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4638106	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6657651	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6667075	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9333483	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9333489	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9333490	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9333494	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9333496	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165602200-165624200	Weak transcription	Dnd41	blood
2	chr1:165603800-165624200	Weak transcription	Brain Germinal Matrix	brain
3	chr1:165603800-165631200	Weak transcription	Fetal Kidney	kidney
4	chr1:165604400-165628000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:165604800-165628400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr1:165604800-165632200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:165605200-165628800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr1:165606200-165659600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:165610600-165630800	Weak transcription	Small Intestine	intestine
10	chr1:165615200-165628400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:165615400-165630000	Weak transcription	GM12878-XiMat	blood
12	chr1:165615600-165629600	Weak transcription	Primary B cells from cord blood	blood
13	chr1:165615600-165630200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr1:165615600-165631000	Weak transcription	NHEK	skin
15	chr1:165615800-165631000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr1:165616400-165630200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr1:165616400-165632000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr1:165617000-165630000	Weak transcription	Thymus	Thymus
19	chr1:165617000-165631200	Strong transcription	Fetal Stomach	stomach
20	chr1:165617400-165625800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr1:165617400-165627800	Strong transcription	Fetal Intestine Small	intestine
22	chr1:165617600-165627800	Strong transcription	Lung	lung
23	chr1:165618000-165626200	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr1:165618000-165627600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr1:165618000-165631000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:165618000-165638600	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr1:165618200-165625400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr1:165618200-165652400	Strong transcription	Fetal Muscle Leg	muscle
29	chr1:165618400-165626400	Strong transcription	Fetal Lung	lung
30	chr1:165618400-165627200	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr1:165618400-165627200	Strong transcription	Sigmoid Colon	Sigmoid Colon
32	chr1:165618600-165627200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr1:165618600-165627800	Strong transcription	Duodenum Mucosa	Duodenum
34	chr1:165618600-165634800	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr1:165618800-165625200	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr1:165618800-165630800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr1:165618800-165638600	Strong transcription	Fetal Intestine Large	intestine
38	chr1:165619000-165624600	Strong transcription	Colonic Mucosa	Colon
39	chr1:165619000-165627000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr1:165619000-165627200	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr1:165619000-165627400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr1:165619000-165627600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr1:165619000-165627800	Strong transcription	Placenta	Placenta
44	chr1:165619000-165627800	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr1:165619000-165635000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr1:165619000-165642600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr1:165619000-165643600	Strong transcription	Fetal Muscle Trunk	muscle
48	chr1:165619200-165627400	Strong transcription	Brain Anterior Caudate	brain
49	chr1:165619200-165628000	Strong transcription	Osteobl	bone
50	chr1:165619200-165630800	Strong transcription	NHDF-Ad	bronchial

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