Variant report

Variant	rs4147611
Chromosome Location	chr1:165625023-165625024
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165618685..165622875-chr1:165623936..165629160,4	K562	blood:
2	chr1:165624974..165629115-chr1:165629566..165633277,5	K562	blood:

Variant related genes	Relation type
ENSG00000143198	Chromatin interaction
ENSG00000206990	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10494446	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10494447	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10800122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10800123	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10800124	0.89[ASN][1000 genomes]
rs10800125	0.83[CHB][hapmap];0.84[CHD][hapmap];0.92[JPT][hapmap];0.88[MEX][hapmap];0.89[ASN][1000 genomes]
rs10800126	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10918229	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.85[JPT][hapmap];0.95[LWK][hapmap];0.87[MEX][hapmap];0.98[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10918230	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10918231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10918232	0.89[ASN][1000 genomes]
rs10918233	0.87[ASN][1000 genomes]
rs10918235	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10918238	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10918239	0.87[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10918240	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12065621	0.83[CHB][hapmap]
rs12072628	0.86[ASN][1000 genomes]
rs12072634	0.83[CHB][hapmap]
rs12072664	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12080699	0.83[CHB][hapmap]
rs12081903	0.83[CHB][hapmap]
rs12670	0.87[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.83[MEX][hapmap];0.87[MKK][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1538113	0.83[ASN][1000 genomes]
rs1878074	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1878075	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050619	0.87[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2184918	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2297762	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2297763	0.83[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs2297765	0.92[CHB][hapmap]
rs2348727	0.83[CHB][hapmap]
rs2348728	0.83[CHB][hapmap]
rs3795540	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3820362	0.83[CHB][hapmap];0.92[JPT][hapmap]
rs4147603	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4147604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4147605	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4147606	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4147607	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4147608	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4147609	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4147610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4427389	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4539111	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4581256	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4590653	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4638106	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4646895	0.83[CHB][hapmap]
rs4646897	0.82[CHB][hapmap]
rs4657463	0.80[YRI][hapmap]
rs56279704	0.83[ASN][1000 genomes]
rs6657651	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6667075	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6683969	0.83[CHB][hapmap]
rs7534437	0.92[CHB][hapmap]
rs8133	0.83[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs9333483	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9333489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9333490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9333494	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9333496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165603800-165631200	Weak transcription	Fetal Kidney	kidney
2	chr1:165604400-165628000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:165604800-165628400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr1:165604800-165632200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:165605200-165628800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr1:165606200-165659600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:165610600-165630800	Weak transcription	Small Intestine	intestine
8	chr1:165615200-165628400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:165615400-165630000	Weak transcription	GM12878-XiMat	blood
10	chr1:165615600-165629600	Weak transcription	Primary B cells from cord blood	blood
11	chr1:165615600-165630200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr1:165615600-165631000	Weak transcription	NHEK	skin
13	chr1:165615800-165631000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr1:165616400-165630200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr1:165616400-165632000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr1:165617000-165630000	Weak transcription	Thymus	Thymus
17	chr1:165617000-165631200	Strong transcription	Fetal Stomach	stomach
18	chr1:165617400-165625800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr1:165617400-165627800	Strong transcription	Fetal Intestine Small	intestine
20	chr1:165617600-165627800	Strong transcription	Lung	lung
21	chr1:165618000-165626200	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr1:165618000-165627600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr1:165618000-165631000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:165618000-165638600	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr1:165618200-165625400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr1:165618200-165652400	Strong transcription	Fetal Muscle Leg	muscle
27	chr1:165618400-165626400	Strong transcription	Fetal Lung	lung
28	chr1:165618400-165627200	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr1:165618400-165627200	Strong transcription	Sigmoid Colon	Sigmoid Colon
30	chr1:165618600-165627200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr1:165618600-165627800	Strong transcription	Duodenum Mucosa	Duodenum
32	chr1:165618600-165634800	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr1:165618800-165625200	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr1:165618800-165630800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr1:165618800-165638600	Strong transcription	Fetal Intestine Large	intestine
36	chr1:165619000-165627000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr1:165619000-165627200	Strong transcription	Duodenum Smooth Muscle	Duodenum
38	chr1:165619000-165627400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr1:165619000-165627600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr1:165619000-165627800	Strong transcription	Placenta	Placenta
41	chr1:165619000-165627800	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr1:165619000-165635000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr1:165619000-165642600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr1:165619000-165643600	Strong transcription	Fetal Muscle Trunk	muscle
45	chr1:165619200-165627400	Strong transcription	Brain Anterior Caudate	brain
46	chr1:165619200-165628000	Strong transcription	Osteobl	bone
47	chr1:165619200-165630800	Strong transcription	NHDF-Ad	bronchial
48	chr1:165619200-165634200	Strong transcription	Stomach Smooth Muscle	stomach
49	chr1:165619200-165648800	Strong transcription	Liver	Liver
50	chr1:165619400-165627600	Strong transcription	Skeletal Muscle Male	skeletal muscle

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