Variant report

Variant	rs56279704
Chromosome Location	chr1:165627733-165627734
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:165618685..165622875-chr1:165623936..165629160,4	K562	blood:
2	chr1:165625676..165628644-chr1:165796353..165798256,2	K562	blood:
3	chr1:165624974..165629115-chr1:165629566..165633277,5	K562	blood:

Variant related genes	Relation type
ENSG00000143179	Chromatin interaction
ENSG00000143183	Chromatin interaction
ENSG00000143198	Chromatin interaction
ENSG00000206990	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10157944	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10494446	0.83[ASN][1000 genomes]
rs10494447	0.83[ASN][1000 genomes]
rs10800122	0.83[ASN][1000 genomes]
rs10800123	0.83[ASN][1000 genomes]
rs10800124	0.94[ASN][1000 genomes]
rs10800125	0.94[ASN][1000 genomes]
rs10918230	0.83[ASN][1000 genomes]
rs10918231	0.83[ASN][1000 genomes]
rs10918232	0.94[ASN][1000 genomes]
rs10918233	0.92[ASN][1000 genomes]
rs12065621	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12069198	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12072628	0.91[ASN][1000 genomes]
rs12072634	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12080699	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12081903	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12083091	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12083232	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12084651	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12122497	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12123278	0.88[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1538113	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17417191	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs17450889	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1878074	0.83[ASN][1000 genomes]
rs1878075	0.83[ASN][1000 genomes]
rs2176151	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2297763	0.97[ASN][1000 genomes]
rs2348727	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2348728	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2348729	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3820362	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4147603	0.83[ASN][1000 genomes]
rs4147604	0.83[ASN][1000 genomes]
rs4147605	0.83[ASN][1000 genomes]
rs4147606	0.83[ASN][1000 genomes]
rs4147610	0.83[ASN][1000 genomes]
rs4147611	0.83[ASN][1000 genomes]
rs4539111	0.83[ASN][1000 genomes]
rs4581256	0.83[ASN][1000 genomes]
rs4646895	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4646896	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4646897	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61800398	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61800420	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61800421	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6662419	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6669697	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6683651	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6683665	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6683969	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7525102	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7534437	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8133	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs884121	0.81[ASN][1000 genomes]
rs9333483	0.83[ASN][1000 genomes]
rs9333489	0.83[ASN][1000 genomes]
rs9333490	0.83[ASN][1000 genomes]
rs9333494	0.83[ASN][1000 genomes]
rs9333496	0.83[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165603800-165631200	Weak transcription	Fetal Kidney	kidney
2	chr1:165604400-165628000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:165604800-165628400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr1:165604800-165632200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:165605200-165628800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr1:165606200-165659600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:165610600-165630800	Weak transcription	Small Intestine	intestine
8	chr1:165615200-165628400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:165615400-165630000	Weak transcription	GM12878-XiMat	blood
10	chr1:165615600-165629600	Weak transcription	Primary B cells from cord blood	blood
11	chr1:165615600-165630200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr1:165615600-165631000	Weak transcription	NHEK	skin
13	chr1:165615800-165631000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr1:165616400-165630200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr1:165616400-165632000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr1:165617000-165630000	Weak transcription	Thymus	Thymus
17	chr1:165617000-165631200	Strong transcription	Fetal Stomach	stomach
18	chr1:165617400-165627800	Strong transcription	Fetal Intestine Small	intestine
19	chr1:165617600-165627800	Strong transcription	Lung	lung
20	chr1:165618000-165631000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr1:165618000-165638600	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr1:165618200-165652400	Strong transcription	Fetal Muscle Leg	muscle
23	chr1:165618600-165627800	Strong transcription	Duodenum Mucosa	Duodenum
24	chr1:165618600-165634800	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr1:165618800-165630800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr1:165618800-165638600	Strong transcription	Fetal Intestine Large	intestine
27	chr1:165619000-165627800	Strong transcription	Placenta	Placenta
28	chr1:165619000-165627800	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr1:165619000-165635000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr1:165619000-165642600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr1:165619000-165643600	Strong transcription	Fetal Muscle Trunk	muscle
32	chr1:165619200-165628000	Strong transcription	Osteobl	bone
33	chr1:165619200-165630800	Strong transcription	NHDF-Ad	bronchial
34	chr1:165619200-165634200	Strong transcription	Stomach Smooth Muscle	stomach
35	chr1:165619200-165648800	Strong transcription	Liver	Liver
36	chr1:165619400-165627800	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr1:165619400-165628000	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr1:165619400-165636200	Strong transcription	Adipose Nuclei	Adipose
39	chr1:165619600-165642600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr1:165619600-165653200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr1:165620200-165627800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr1:165620400-165628800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr1:165620800-165631000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr1:165620800-165631200	Weak transcription	HepG2	liver
45	chr1:165621000-165630800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr1:165621000-165634400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr1:165621200-165628800	Weak transcription	Brain Cingulate Gyrus	brain
48	chr1:165621600-165632200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr1:165621800-165628000	Strong transcription	Colon Smooth Muscle	Colon
50	chr1:165622600-165630600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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