The 2.0 version of rSNPBase

Variant report

Variant rs17450889
Chromosome Location chr1:165642273-165642274
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:165606200-165659600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:165618200-165652400 Strong transcription Fetal Muscle Leg muscle
3 chr1:165619000-165642600 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
4 chr1:165619000-165643600 Strong transcription Fetal Muscle Trunk muscle
5 chr1:165619200-165648800 Strong transcription Liver Liver
6 chr1:165619600-165642600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr1:165619600-165653200 Strong transcription Breast Myoepithelial Primary Cells Breast
8 chr1:165623400-165653000 Weak transcription Stomach Mucosa stomach
9 chr1:165628000-165646600 Strong transcription Primary T cells from cord blood blood
10 chr1:165628800-165644000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
11 chr1:165628800-165646800 Strong transcription Primary T helper cells fromperipheralblood blood
12 chr1:165628800-165646800 Strong transcription Primary T regulatory cells fromperipheralblood blood
13 chr1:165629000-165653600 Strong transcription Dnd41 blood
14 chr1:165629200-165642800 Strong transcription Primary hematopoietic stem cells blood
15 chr1:165629200-165643600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
16 chr1:165629400-165642600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr1:165629400-165652800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
18 chr1:165629400-165654200 Weak transcription iPS-15b Cell Line embryonic stem cell
19 chr1:165629400-165656000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
20 chr1:165629600-165643000 Strong transcription Primary B cells from cord blood blood
21 chr1:165629600-165654800 Strong transcription Primary T cells fromperipheralblood blood
22 chr1:165629800-165643600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr1:165629800-165654800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
24 chr1:165630000-165654400 Strong transcription Primary B cells from peripheral blood blood
25 chr1:165631000-165643400 Strong transcription Hela-S3 cervix
26 chr1:165632200-165645400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
27 chr1:165632400-165649400 Weak transcription ES-I3 Cell Line embryonic stem cell
28 chr1:165633600-165651200 Weak transcription Pancreas Pancrea
29 chr1:165633600-165651400 Weak transcription Gastric stomach
30 chr1:165633800-165651000 Weak transcription Small Intestine intestine
31 chr1:165634400-165644600 Weak transcription Fetal Brain Male brain
32 chr1:165634400-165651800 Weak transcription Fetal Heart heart
33 chr1:165634600-165644800 Weak transcription Brain Hippocampus Middle brain
34 chr1:165635200-165647800 Weak transcription Brain Cingulate Gyrus brain
35 chr1:165635800-165645600 Strong transcription Primary hematopoietic stem cells short term culture blood
36 chr1:165635800-165648600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
37 chr1:165636000-165652400 Strong transcription Fetal Adrenal Gland Adrenal Gland
38 chr1:165636400-165643600 Strong transcription Fetal Intestine Small intestine
39 chr1:165636600-165642600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
40 chr1:165637800-165645400 Weak transcription Right Ventricle heart
41 chr1:165637800-165645400 Weak transcription Spleen Spleen
42 chr1:165637800-165645400 Weak transcription HSMMtube muscle
43 chr1:165637800-165648600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
44 chr1:165637800-165649200 Weak transcription Aorta Aorta
45 chr1:165637800-165651200 Weak transcription NHEK skin
46 chr1:165637800-165653400 Weak transcription Pancreatic Islets Pancreatic Islet
47 chr1:165638000-165645400 Weak transcription Brain Inferior Temporal Lobe brain
48 chr1:165638000-165645400 Weak transcription Lung lung
49 chr1:165638000-165647800 Weak transcription HMEC breast
50 chr1:165638000-165666800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell

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Last update: Aug 31, 2015