Variant report

Variant	rs12148408
Chromosome Location	chr15:53405884-53405885
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12148106	1.00[ASN][1000 genomes]
rs1508034	1.00[ASN][1000 genomes]
rs1508035	1.00[ASN][1000 genomes]
rs16965523	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs16965603	1.00[ASN][1000 genomes]
rs16965675	1.00[ASN][1000 genomes]
rs16965678	1.00[ASN][1000 genomes]
rs16965695	1.00[ASN][1000 genomes]
rs1949097	1.00[ASN][1000 genomes]
rs28416159	1.00[ASN][1000 genomes]
rs28446966	1.00[ASN][1000 genomes]
rs28526360	1.00[ASN][1000 genomes]
rs28539911	1.00[ASN][1000 genomes]
rs28557174	1.00[ASN][1000 genomes]
rs28566909	1.00[ASN][1000 genomes]
rs28690629	1.00[ASN][1000 genomes]
rs28706517	1.00[ASN][1000 genomes]
rs3848136	1.00[ASN][1000 genomes]
rs8026349	1.00[ASN][1000 genomes]
rs8029569	1.00[ASN][1000 genomes]
rs8039214	1.00[ASN][1000 genomes]
rs9920505	1.00[ASN][1000 genomes]
rs9920833	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833007	chr15:53264564-53453525	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv904221	chr15:53279378-53434365	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3343986	chr15:53284440-53571936	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1050535	chr15:53352572-53472957	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1039762	chr15:53354285-53414479	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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