Variant report
| Variant | rs16965603 |
|---|---|
| Chromosome Location | chr15:53455010-53455011 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs12148106 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12148408 | 1.00[CEU][hapmap] |
| rs1508034 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1508035 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16965523 | 1.00[CEU][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16965675 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16965678 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16965695 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1949097 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28416159 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28446966 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28526360 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28539911 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28557174 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28566909 | 1.00[ASN][1000 genomes] |
| rs28690629 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28706517 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3848136 | 0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74016429 | 0.88[AFR][1000 genomes] |
| rs8026349 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8029569 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8039214 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9920505 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9920833 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3343986 | chr15:53284440-53571936 | Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv1037630 | chr15:53324645-53708925 | Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv1050535 | chr15:53352572-53472957 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:53454600-53455400 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
