Variant report
Variant | rs12152213 |
---|---|
Chromosome Location | chr3:151217150-151217151 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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Variant related genes | Relation type |
---|---|
ENSG00000242119 | TF binding region |
rs_ID | r2[population] |
---|---|
rs10935855 | 0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs11918597 | 0.86[AFR][1000 genomes];0.82[EUR][1000 genomes] |
rs11919438 | 0.84[AFR][1000 genomes];0.86[EUR][1000 genomes] |
rs11920961 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12185992 | 0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs12492469 | 0.82[EUR][1000 genomes] |
rs12630095 | 0.85[YRI][hapmap] |
rs28844906 | 0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs34819348 | 0.92[EUR][1000 genomes] |
rs4264708 | 0.89[EUR][1000 genomes] |
rs4270481 | 0.92[EUR][1000 genomes] |
rs4270482 | 0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4289322 | 0.91[AFR][1000 genomes];0.84[EUR][1000 genomes] |
rs4312631 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs4343605 | 0.80[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs4490330 | 0.81[EUR][1000 genomes] |
rs4546128 | 0.91[AFR][1000 genomes];0.90[EUR][1000 genomes] |
rs4564957 | 0.81[EUR][1000 genomes] |
rs4632523 | 0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs55649933 | 0.84[AFR][1000 genomes];0.85[EUR][1000 genomes] |
rs55650514 | 0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs55733852 | 0.81[EUR][1000 genomes] |
rs55897734 | 0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs56164325 | 0.84[AFR][1000 genomes];0.85[EUR][1000 genomes] |
rs56168503 | 0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs56397550 | 0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs56407542 | 0.80[EUR][1000 genomes] |
rs62281718 | 0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs6440760 | 0.83[AFR][1000 genomes];0.81[EUR][1000 genomes] |
rs6440762 | 0.88[AFR][1000 genomes];0.84[EUR][1000 genomes] |
rs66786641 | 0.83[AFR][1000 genomes];0.84[EUR][1000 genomes] |
rs6766991 | 0.84[EUR][1000 genomes] |
rs6767020 | 0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs6776211 | 0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs67817972 | 0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs6787645 | 0.87[AFR][1000 genomes] |
rs6802648 | 0.84[EUR][1000 genomes] |
rs73162221 | 0.84[AFR][1000 genomes];0.85[EUR][1000 genomes] |
rs73162245 | 0.80[EUR][1000 genomes] |
rs73164611 | 0.89[ASN][1000 genomes] |
rs7427384 | 0.81[EUR][1000 genomes] |
rs7612959 | 0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs7622119 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs7632288 | 0.94[AFR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7632849 | 0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs7639171 | 0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv829757 | chr3:151044880-151226442 | Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
2 | nsv1000355 | chr3:151108859-151243835 | Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
3 | nsv995048 | chr3:151114074-151560019 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
4 | nsv877649 | chr3:151147968-151236562 | Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
5 | nsv877650 | chr3:151174010-151314449 | Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
6 | nsv819466 | chr3:151196634-151219966 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
7 | nsv528372 | chr3:151210190-151218277 | Enhancers Weak transcription | TF binding region | 1 gene(s) | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:151216400-151217200 | Enhancers | HUES64 Cell Line | embryonic stem cell |
2 | chr3:151216400-151217400 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
3 | chr3:151216400-151217400 | Enhancers | ES-UCSF4 Cell Line | embryonic stem cell |
4 | chr3:151216600-151217200 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
5 | chr3:151216800-151217400 | Enhancers | Fetal Lung | lung |