Variant report

Variant	rs73164611
Chromosome Location	chr3:151252694-151252695
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:151252320..151254968-chr3:151257650..151259155,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10935855	0.83[EUR][1000 genomes]
rs11918597	0.90[EUR][1000 genomes]
rs11919438	0.82[EUR][1000 genomes]
rs11920961	0.89[ASN][1000 genomes]
rs12152213	0.89[ASN][1000 genomes]
rs12492469	0.91[EUR][1000 genomes]
rs28844906	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4264708	0.84[EUR][1000 genomes]
rs4270481	0.86[EUR][1000 genomes]
rs4270482	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4289322	0.91[EUR][1000 genomes]
rs4490330	0.85[EUR][1000 genomes]
rs4546128	0.86[EUR][1000 genomes]
rs4632523	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55649933	0.81[EUR][1000 genomes]
rs55650514	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55733852	0.85[EUR][1000 genomes]
rs56164325	0.81[EUR][1000 genomes]
rs56168503	0.82[EUR][1000 genomes]
rs56407542	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6440760	0.88[EUR][1000 genomes]
rs6440762	0.91[EUR][1000 genomes]
rs6440766	0.87[EUR][1000 genomes]
rs66786641	0.91[EUR][1000 genomes]
rs6766991	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6767020	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67817972	0.83[EUR][1000 genomes]
rs6787645	0.87[EUR][1000 genomes]
rs6802648	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73162221	0.81[EUR][1000 genomes]
rs73162245	0.89[EUR][1000 genomes]
rs73164612	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7427384	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7621142	0.83[EUR][1000 genomes]
rs7632288	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7632849	0.80[EUR][1000 genomes]
rs7639171	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995048	chr3:151114074-151560019	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv877650	chr3:151174010-151314449	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151252400-151252800	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links