Variant report

Variant	rs55733852
Chromosome Location	chr3:151253871-151253872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12152213	0.81[EUR][1000 genomes]
rs28844906	0.84[EUR][1000 genomes]
rs34819348	0.84[ASN][1000 genomes]
rs4264708	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4270481	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4270482	0.86[EUR][1000 genomes]
rs4490330	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4632523	0.85[EUR][1000 genomes]
rs55650514	0.80[EUR][1000 genomes]
rs56407542	0.81[EUR][1000 genomes]
rs6440766	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6766991	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6767020	0.80[EUR][1000 genomes]
rs6802648	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73164611	0.85[EUR][1000 genomes]
rs73164612	0.84[EUR][1000 genomes]
rs7427384	0.81[EUR][1000 genomes]
rs7621142	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7632288	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995048	chr3:151114074-151560019	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv877650	chr3:151174010-151314449	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151253600-151254400	Enhancers	Fetal Lung	lung
2	chr3:151253800-151254000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr3:151253800-151254000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr3:151253800-151254000	Enhancers	Fetal Stomach	stomach
5	chr3:151253800-151254000	Enhancers	Ovary	ovary
6	chr3:151253800-151254000	Enhancers	Psoas Muscle	Psoas
7	chr3:151253800-151254200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:151253800-151254400	Enhancers	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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