Variant report

Variant	rs73164612
Chromosome Location	chr3:151256144-151256145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:151254596..151257098-chr3:151270755..151272685,2	K562	blood:
2	chr3:151255768..151257475-chr3:151274884..151276794,2	MCF-7	breast:
3	chr3:151255227..151257598-chr3:151259355..151262093,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10935855	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11918597	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11919438	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12492469	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28844906	0.82[EUR][1000 genomes]
rs4264708	0.83[EUR][1000 genomes]
rs4270481	0.85[EUR][1000 genomes]
rs4270482	0.84[EUR][1000 genomes]
rs4289322	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4490330	0.84[EUR][1000 genomes]
rs4546128	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4632523	0.82[EUR][1000 genomes]
rs55649933	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55650514	0.92[EUR][1000 genomes]
rs55733852	0.84[EUR][1000 genomes]
rs56164325	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56168503	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56407542	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6440760	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6440762	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6440766	0.86[EUR][1000 genomes]
rs66786641	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6766991	0.91[EUR][1000 genomes]
rs6767020	0.92[EUR][1000 genomes]
rs67817972	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6787645	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6802648	0.91[EUR][1000 genomes]
rs73162221	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73162245	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73164611	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7427384	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7621142	0.81[EUR][1000 genomes]
rs7622119	0.96[ASN][1000 genomes]
rs7632288	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995048	chr3:151114074-151560019	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv877650	chr3:151174010-151314449	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151254000-151256600	Weak transcription	Psoas Muscle	Psoas
2	chr3:151254000-151257000	Weak transcription	Fetal Stomach	stomach
3	chr3:151254200-151256400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:151254400-151261200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:151254800-151256600	Enhancers	Osteobl	bone
6	chr3:151254800-151257400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr3:151254800-151257400	Active TSS	Ovary	ovary
8	chr3:151255000-151256200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:151255000-151256600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:151255200-151256200	Enhancers	NHDF-Ad	bronchial
11	chr3:151255200-151256400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:151255200-151256400	Enhancers	Fetal Lung	lung
13	chr3:151255200-151257000	Enhancers	NH-A	brain
14	chr3:151255200-151257200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:151255400-151256200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:151255400-151256400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr3:151255400-151256600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr3:151255600-151256200	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr3:151255600-151256400	Enhancers	Colon Smooth Muscle	Colon
20	chr3:151255600-151257200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr3:151255600-151257200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:151255600-151257400	Enhancers	Brain Germinal Matrix	brain
23	chr3:151255600-151257600	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr3:151255800-151256200	Enhancers	Adipose Nuclei	Adipose
25	chr3:151255800-151257200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr3:151255800-151257200	Enhancers	Fetal Muscle Leg	muscle
27	chr3:151255800-151261000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr3:151255800-151261000	Weak transcription	HMEC	breast
29	chr3:151256000-151256400	Weak transcription	NHLF	lung
30	chr3:151256000-151257000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr3:151256000-151257200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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