Variant report

Variant	rs55650514
Chromosome Location	chr3:151243333-151243334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10935855	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11918597	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11919438	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11920961	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12152213	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12185992	0.81[EUR][1000 genomes]
rs12492469	0.96[EUR][1000 genomes]
rs28844906	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34819348	0.81[EUR][1000 genomes]
rs4264708	0.89[EUR][1000 genomes]
rs4270481	0.91[EUR][1000 genomes]
rs4270482	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4289322	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4312631	0.85[EUR][1000 genomes]
rs4343605	0.83[EUR][1000 genomes]
rs4490330	0.80[EUR][1000 genomes]
rs4546128	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4632523	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55649933	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs55733852	0.80[EUR][1000 genomes]
rs55897734	0.83[EUR][1000 genomes]
rs56164325	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs56168503	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs56397550	0.83[EUR][1000 genomes]
rs56407542	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62281718	0.84[EUR][1000 genomes]
rs6440760	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6440762	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6440766	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66786641	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6766991	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6767020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6776211	0.80[EUR][1000 genomes]
rs67817972	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6787645	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6802648	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73162221	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73162245	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73164611	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73164612	0.92[EUR][1000 genomes]
rs7427384	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7612959	0.86[EUR][1000 genomes]
rs7622119	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7632288	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7632849	0.86[EUR][1000 genomes]
rs7639171	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000355	chr3:151108859-151243835	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv995048	chr3:151114074-151560019	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv877650	chr3:151174010-151314449	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151219000-151252400	Weak transcription	Ovary	ovary
2	chr3:151243200-151243800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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