Variant report

Variant	rs12167896
Chromosome Location	chr22:32889796-32889797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:32883889..32885568-chr22:32888342..32890898,2	K562	blood:
2	chr22:32879087..32881593-chr22:32888783..32892054,3	K562	blood:
3	22:32889404-32895878..22:33262063-33266567	Hela-S3	cervix:
4	chr22:32879087..32881935-chr22:32888210..32890953,3	K562	blood:

Variant related genes	Relation type
ENSG00000185666	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12167840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6518785	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67999115	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73170402	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs738980	1.00[CHB][hapmap]
rs8135209	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8142589	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9619267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9621461	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12167896	FBXO7	cis	Esophagus Mucosa	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32872000-32891000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr22:32872200-32898200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr22:32872200-32898400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr22:32872200-32899600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr22:32873000-32898000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr22:32874800-32896000	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr22:32874800-32896400	Strong transcription	Dnd41	blood
8	chr22:32875200-32890400	Weak transcription	Aorta	Aorta
9	chr22:32876000-32896400	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr22:32876600-32894800	Strong transcription	Primary B cells from peripheral blood	blood
11	chr22:32877000-32896400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr22:32877200-32898000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr22:32877800-32890000	Strong transcription	Primary T cells from cord blood	blood
14	chr22:32877800-32895400	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr22:32878200-32896600	Strong transcription	Primary B cells from cord blood	blood
16	chr22:32878800-32892000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr22:32878800-32895200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr22:32878800-32895200	Strong transcription	Fetal Muscle Leg	muscle
19	chr22:32879200-32891200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr22:32879200-32895400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr22:32879200-32896200	Strong transcription	Left Ventricle	heart
22	chr22:32879400-32895200	Strong transcription	HepG2	liver
23	chr22:32879400-32896000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr22:32879400-32896200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr22:32879400-32896600	Strong transcription	Duodenum Mucosa	Duodenum
26	chr22:32879600-32894800	Strong transcription	Fetal Thymus	thymus
27	chr22:32879600-32896000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr22:32879600-32896000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr22:32879600-32896600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr22:32879800-32895200	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr22:32879800-32895600	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr22:32879800-32896000	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr22:32879800-32896400	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr22:32879800-32896400	Strong transcription	GM12878-XiMat	blood
35	chr22:32879800-32896600	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr22:32880000-32893800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
37	chr22:32880000-32894800	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr22:32880000-32895000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr22:32880000-32895200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr22:32880000-32895400	Strong transcription	Stomach Smooth Muscle	stomach
41	chr22:32880000-32895800	Strong transcription	Placenta	Placenta
42	chr22:32880000-32896000	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr22:32880000-32896200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr22:32880000-32896200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr22:32880000-32896200	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr22:32880000-32896400	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr22:32880000-32896600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr22:32880200-32896400	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr22:32880600-32895200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr22:32881000-32894800	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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