Variant report

Variant	rs8135209
Chromosome Location	chr22:32875557-32875558
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:32875068..32878003-chr22:32885143..32887557,3	K562	blood:
2	chr22:32873449..32876014-chr22:33195387..33198121,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100234	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12167840	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12167896	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5754125	0.80[ASN][1000 genomes]
rs6518785	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67999115	0.94[EUR][1000 genomes]
rs73170402	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8142589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9619267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9621461	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8135209	FBXO7	cis	Esophagus Mucosa	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32872000-32876200	Weak transcription	Left Ventricle	heart
2	chr22:32872000-32876400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr22:32872000-32878800	Weak transcription	Spleen	Spleen
4	chr22:32872000-32881000	Weak transcription	Esophagus	oesophagus
5	chr22:32872000-32881000	Weak transcription	Lung	lung
6	chr22:32872000-32881400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr22:32872000-32884400	Weak transcription	Pancreas	Pancrea
8	chr22:32872000-32884800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr22:32872000-32889000	Weak transcription	Gastric	stomach
10	chr22:32872000-32891000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr22:32872200-32875800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr22:32872200-32877600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr22:32872200-32880000	Weak transcription	Placenta	Placenta
14	chr22:32872200-32882600	Weak transcription	Colonic Mucosa	Colon
15	chr22:32872200-32885200	Weak transcription	Stomach Mucosa	stomach
16	chr22:32872200-32886200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr22:32872200-32889000	Weak transcription	Fetal Brain Male	brain
18	chr22:32872200-32898200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr22:32872200-32898400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr22:32872200-32899600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr22:32872400-32875800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr22:32872400-32881000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr22:32872400-32881000	Weak transcription	HSMMtube	muscle
24	chr22:32872400-32881200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr22:32872600-32880800	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr22:32872600-32881000	Weak transcription	Fetal Brain Female	brain
27	chr22:32872800-32875600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr22:32873000-32876000	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr22:32873000-32880000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr22:32873000-32880000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr22:32873000-32880600	Weak transcription	NH-A	brain
32	chr22:32873000-32882200	Weak transcription	Fetal Stomach	stomach
33	chr22:32873000-32889600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr22:32873000-32898000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr22:32873200-32875600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr22:32873200-32876000	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr22:32873200-32876200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr22:32873200-32876200	Weak transcription	Right Ventricle	heart
39	chr22:32873200-32876400	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr22:32873200-32876400	Weak transcription	Psoas Muscle	Psoas
41	chr22:32873200-32877800	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr22:32873200-32878200	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr22:32873200-32879600	Weak transcription	HUVEC	blood vessel
44	chr22:32873200-32879600	Weak transcription	NHDF-Ad	bronchial
45	chr22:32873200-32879800	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr22:32873200-32880000	Weak transcription	Osteobl	bone
47	chr22:32873200-32880400	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr22:32873200-32881000	Weak transcription	A549	lung
49	chr22:32873200-32881600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr22:32873200-32883400	Weak transcription	NHLF	lung

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