Variant report

Variant	rs73170402
Chromosome Location	chr22:32899879-32899880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1056484	0.83[ASN][1000 genomes]
rs12167840	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12167896	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs130444	0.85[ASN][1000 genomes]
rs130445	0.85[ASN][1000 genomes]
rs130446	0.82[ASN][1000 genomes]
rs2097312	0.85[ASN][1000 genomes]
rs5754125	0.87[ASN][1000 genomes]
rs6518785	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67999115	0.92[EUR][1000 genomes]
rs8135209	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8142589	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9619267	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9621461	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs73170402	FBXO7	cis	Esophagus Mucosa	GTEx

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32889800-32908800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr22:32891800-32904400	Weak transcription	Hela-S3	cervix
3	chr22:32892200-32909400	Weak transcription	Aorta	Aorta
4	chr22:32894400-32905200	Weak transcription	Fetal Brain Male	brain
5	chr22:32894400-32913200	Weak transcription	Fetal Brain Female	brain
6	chr22:32894600-32907200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr22:32894800-32900200	Weak transcription	Gastric	stomach
8	chr22:32894800-32906600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr22:32894800-32912000	Weak transcription	Fetal Intestine Small	intestine
10	chr22:32894800-32914200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr22:32895200-32906200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr22:32895200-32906600	Weak transcription	HepG2	liver
13	chr22:32895200-32907200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr22:32895200-32909200	Weak transcription	Spleen	Spleen
15	chr22:32895200-32909600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr22:32895200-32910000	Weak transcription	HSMMtube	muscle
17	chr22:32895200-32913600	Weak transcription	Brain Germinal Matrix	brain
18	chr22:32895200-32918400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr22:32895400-32901000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr22:32895400-32907200	Weak transcription	Fetal Stomach	stomach
21	chr22:32895400-32914000	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr22:32895600-32905800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr22:32895800-32913200	Weak transcription	Placenta	Placenta
24	chr22:32896000-32906000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr22:32896000-32913200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr22:32896400-32904400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr22:32896400-32907000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr22:32896400-32907600	Weak transcription	Liver	Liver
29	chr22:32896400-32909600	Weak transcription	Lung	lung
30	chr22:32896600-32906800	Weak transcription	Primary B cells from cord blood	blood
31	chr22:32897200-32907200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr22:32897200-32914200	Weak transcription	Primary T cells from cord blood	blood
33	chr22:32898600-32902800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr22:32898600-32905200	Weak transcription	Fetal Muscle Trunk	muscle
35	chr22:32898600-32906600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr22:32898600-32906800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr22:32898600-32909800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr22:32898600-32913800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr22:32898600-32928000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr22:32898800-32901000	Active TSS	HUES6 Cell Line	embryonic stem cell
41	chr22:32898800-32901600	Active TSS	ES-I3 Cell Line	embryonic stem cell
42	chr22:32898800-32903800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr22:32898800-32904000	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr22:32898800-32904200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr22:32898800-32904400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr22:32898800-32904400	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr22:32898800-32904600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr22:32898800-32904600	Weak transcription	Brain Angular Gyrus	brain
49	chr22:32898800-32904800	Weak transcription	Brain Cingulate Gyrus	brain
50	chr22:32898800-32904800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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