Variant report

Variant	rs67999115
Chromosome Location	chr22:32867876-32867877
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	22:32162110-32166713..22:32865649-32868055	Hela-S3	cervix:
2	chr22:32865878..32868084-chr22:32869727..32872318,3	K562	blood:
3	22:32012966-32043914..22:32865649-32868055	K562	blood:
4	chr22:32862107..32865404-chr22:32866930..32869898,3	K562	blood:
5	chr22:32866340..32868922-chr22:32868961..32870500,2	K562	blood:

Variant related genes	Relation type
ENSG00000100225	Chromatin interaction
ENSG00000241878	Chromatin interaction
ENSG00000100150	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12167840	0.94[EUR][1000 genomes]
rs12167896	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6518785	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73170402	0.92[EUR][1000 genomes]
rs8135209	0.94[EUR][1000 genomes]
rs8142589	0.94[EUR][1000 genomes]
rs9619267	0.90[EUR][1000 genomes]
rs9621461	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs67999115	FBXO7	cis	Esophagus Mucosa	GTEx

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32865200-32869800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:32866000-32869400	Weak transcription	Brain Substantia Nigra	brain
3	chr22:32866000-32869600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr22:32866000-32869800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr22:32866200-32869200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr22:32866200-32869200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr22:32866200-32869400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr22:32866200-32869600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr22:32866200-32869600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr22:32866200-32869600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr22:32866200-32869600	Weak transcription	HSMMtube	muscle
12	chr22:32866200-32869600	Weak transcription	K562	blood
13	chr22:32866200-32869600	Weak transcription	NHLF	lung
14	chr22:32866200-32869800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr22:32866200-32869800	Weak transcription	HSMM	muscle
16	chr22:32866400-32868000	Weak transcription	A549	lung
17	chr22:32866400-32869200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr22:32866400-32869200	Weak transcription	Brain Hippocampus Middle	brain
19	chr22:32866400-32869400	Weak transcription	Colon Smooth Muscle	Colon
20	chr22:32866400-32869400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr22:32866400-32869600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr22:32866400-32869600	Weak transcription	Brain Anterior Caudate	brain
23	chr22:32866400-32869600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr22:32866400-32869600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr22:32866400-32869800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr22:32866600-32869600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr22:32866600-32869600	Weak transcription	Brain Angular Gyrus	brain
28	chr22:32866600-32869600	Weak transcription	NHDF-Ad	bronchial
29	chr22:32866800-32869600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr22:32866800-32869600	Weak transcription	Fetal Brain Male	brain
31	chr22:32867200-32869600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr22:32867800-32868400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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