The 2.0 version of rSNPBase

Variant report

Variant rs12171107
Chromosome Location chr22:32309188-32309189
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr22:32242400-32313400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
2 chr22:32276000-32315200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr22:32281000-32314800 Weak transcription Right Atrium heart
4 chr22:32295800-32314600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr22:32297800-32314800 Weak transcription Brain Substantia Nigra brain
6 chr22:32298000-32311600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
7 chr22:32298200-32314400 Weak transcription Fetal Brain Male brain
8 chr22:32299400-32313000 Weak transcription Primary hematopoietic stem cells blood
9 chr22:32300200-32310200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr22:32300200-32314600 Weak transcription Psoas Muscle Psoas
11 chr22:32302000-32324800 Weak transcription Fetal Thymus thymus
12 chr22:32302400-32322600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
13 chr22:32302800-32309200 Weak transcription Placenta Amnion Placenta Amnion
14 chr22:32302800-32313200 Weak transcription Primary T cells fromperipheralblood blood
15 chr22:32303000-32310200 Weak transcription Placenta Placenta
16 chr22:32303000-32311400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
17 chr22:32303000-32314600 Weak transcription Right Ventricle heart
18 chr22:32303200-32313600 Weak transcription Colon Smooth Muscle Colon
19 chr22:32303200-32315000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
20 chr22:32303200-32318400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr22:32303400-32309800 Weak transcription Primary T helper naive cells fromperipheralblood blood
22 chr22:32303400-32314600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
23 chr22:32304000-32314600 Weak transcription Skeletal Muscle Female skeletal muscle
24 chr22:32304000-32314800 Weak transcription Brain Angular Gyrus brain
25 chr22:32304200-32309400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
26 chr22:32304200-32313200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
27 chr22:32304200-32314400 Weak transcription Brain Hippocampus Middle brain
28 chr22:32304200-32314600 Weak transcription Brain Cingulate Gyrus brain
29 chr22:32304200-32314600 Weak transcription Left Ventricle heart
30 chr22:32304200-32316400 Weak transcription Esophagus oesophagus
31 chr22:32304400-32309200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
32 chr22:32304400-32309800 Weak transcription Thymus Thymus
33 chr22:32304400-32311600 Weak transcription HUES6 Cell Line embryonic stem cell
34 chr22:32304400-32312200 Weak transcription Rectal Smooth Muscle rectum
35 chr22:32304400-32312800 Weak transcription Adipose Nuclei Adipose
36 chr22:32304400-32312800 Weak transcription Skeletal Muscle Male skeletal muscle
37 chr22:32304400-32313200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
38 chr22:32304400-32314800 Weak transcription Brain Anterior Caudate brain
39 chr22:32304400-32314800 Weak transcription Brain Inferior Temporal Lobe brain
40 chr22:32304400-32318000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
41 chr22:32304400-32319000 Weak transcription Fetal Lung lung
42 chr22:32304400-32339600 Weak transcription Brain Germinal Matrix brain
43 chr22:32304600-32313400 Weak transcription Primary T regulatory cells fromperipheralblood blood
44 chr22:32304600-32314400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr22:32305200-32321600 Weak transcription Fetal Brain Female brain
46 chr22:32305600-32313600 Weak transcription Primary T helper cells fromperipheralblood blood
47 chr22:32305600-32314600 Weak transcription Cortex derived primary cultured neurospheres brain
48 chr22:32306600-32311400 Weak transcription Primary neutrophils fromperipheralblood blood
49 chr22:32306600-32311400 Weak transcription GM12878-XiMat blood
50 chr22:32306600-32311600 Weak transcription Primary monocytes fromperipheralblood blood

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Last update: Aug 31, 2015