Variant report

Variant	rs12484821
Chromosome Location	chr22:32219591-32219592
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:32218499..32222898-chr22:32223003..32225182,4	K562	blood:
2	22:32215168-32228866..22:32342898-32343477	K562	blood:
3	chr22:32218053..32219986-chr22:32340600..32342662,2	K562	blood:
4	chr22:32212758..32214852-chr22:32216894..32219629,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128254	Chromatin interaction
ENSG00000236132	Chromatin interaction
ENSG00000128245	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12168215	0.85[ASN][1000 genomes]
rs12168279	0.85[ASN][1000 genomes]
rs12171107	0.85[ASN][1000 genomes]
rs12483798	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12484163	0.85[ASN][1000 genomes]
rs12484712	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12484968	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12485090	0.85[ASN][1000 genomes]
rs16989337	1.00[JPT][hapmap]
rs16989636	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16989665	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs59604916	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32172200-32254400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr22:32172800-32221000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr22:32187800-32222000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr22:32188000-32220000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr22:32188600-32222600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr22:32188800-32259600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr22:32189800-32225200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr22:32192400-32242200	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr22:32192400-32251000	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr22:32192400-32266600	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr22:32192800-32220000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr22:32193000-32250600	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr22:32193200-32226800	Strong transcription	Fetal Muscle Trunk	muscle
14	chr22:32193200-32228400	Strong transcription	Adipose Nuclei	Adipose
15	chr22:32193200-32246000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr22:32193200-32250600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr22:32193400-32220200	Strong transcription	Primary B cells from peripheral blood	blood
18	chr22:32196600-32224800	Weak transcription	Hela-S3	cervix
19	chr22:32197200-32251000	Strong transcription	Primary B cells from cord blood	blood
20	chr22:32197400-32219800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr22:32204800-32225800	Strong transcription	Duodenum Smooth Muscle	Duodenum
22	chr22:32205000-32219600	Strong transcription	Brain Hippocampus Middle	brain
23	chr22:32205000-32220000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr22:32205000-32228200	Strong transcription	Fetal Muscle Leg	muscle
25	chr22:32205000-32228600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr22:32205200-32225200	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr22:32205200-32226600	Strong transcription	Fetal Thymus	thymus
28	chr22:32205200-32257600	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr22:32206200-32219600	Strong transcription	Skeletal Muscle Male	skeletal muscle
30	chr22:32206400-32225600	Strong transcription	Left Ventricle	heart
31	chr22:32206600-32220200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
32	chr22:32207200-32222000	Strong transcription	Rectal Smooth Muscle	rectum
33	chr22:32207400-32220000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
34	chr22:32207800-32244000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr22:32209000-32219600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr22:32209000-32245800	Strong transcription	Primary T cells from cord blood	blood
37	chr22:32209000-32254600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr22:32209200-32226600	Strong transcription	Sigmoid Colon	Sigmoid Colon
39	chr22:32209400-32225600	Weak transcription	Stomach Mucosa	stomach
40	chr22:32209600-32222600	Strong transcription	Spleen	Spleen
41	chr22:32210000-32221400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr22:32210000-32222200	Strong transcription	Brain Germinal Matrix	brain
43	chr22:32210200-32219600	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr22:32210200-32220000	Strong transcription	Dnd41	blood
45	chr22:32210200-32225200	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr22:32210200-32226000	Strong transcription	Stomach Smooth Muscle	stomach
47	chr22:32210400-32219600	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr22:32210400-32219800	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr22:32210400-32219800	Strong transcription	Placenta	Placenta
50	chr22:32210400-32225200	Strong transcription	HUES48 Cell Line	embryonic stem cell

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